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A primary challenge in utilizing in-vitro biological neural networks for computations is finding good encoding and decoding schemes for inputting and decoding data to and from the networks. Furthermore, identifying the optimal parameter…

Neurons and Cognition · Quantitative Biology 2024-04-18 Trym A. E. Lindell , Ola H. Ramstad , Ionna Sandvig , Axel Sandvig , Stefano Nichele

Grid cells, discovered more than a decade ago [5], are neurons in the brain of mammals that fire when the animal is located near certain specific points in its familiar terrain. Intriguingly, these points form, for a single cell, a…

Neurons and Cognition · Quantitative Biology 2016-06-16 Christos H. Papadimitriou

Repeating spatiotemporal spike patterns exist and carry information. Here we investigated how a single spiking neuron can optimally respond to one given pattern (localist coding), or to either one of several patterns (distributed coding,…

Neural and Evolutionary Computing · Computer Science 2018-09-24 Timothée Masquelier , Saeed Reza Kheradpisheh

Fixed point networks are dynamic networks that encode stimuli via distinct output patterns. Although such networks are omnipresent in neural systems, their structures are typically unknown or poorly characterized. It is therefore valuable…

Neurons and Cognition · Quantitative Biology 2017-05-10 David Blaszka , Elischa Sanders , Jeffrey Riffell , Eli Shlizerman

Precise control of signal propagation in modular neural networks represents a fundamental challenge in computational neuroscience. We establish a framework for identifying optimal control nodes that maximize stimulus transmission between…

Neurons and Cognition · Quantitative Biology 2025-08-18 Bulat Batuev , Arsenii Onuchin , Sergey Sukhov

Biological neural networks exist in physical space where distance influences communication delays: a fundamental coupling between space and time absent in most artificial neural networks. While recent work has separately explored spatial…

Neural and Evolutionary Computing · Computer Science 2026-01-27 Balázs Mészáros , James C. Knight , Danyal Akarca , Thomas Nowotny

Sensory systems across all modalities and species exhibit adaptation to continuously changing input statistics. Individual neurons have been shown to modulate their response gains so as to maximize information transmission in different…

Neurons and Cognition · Quantitative Biology 2023-06-01 Lyndon R. Duong , Colin Bredenberg , David J. Heeger , Eero P. Simoncelli

Robotic and animal mapping systems share many of the same objectives and challenges, but differ in one key aspect: where much of the research in robotic mapping has focused on solving the data association problem, the grid cell neurons…

Computer Vision and Pattern Recognition · Computer Science 2018-10-24 Huu Le , Michael Milford

Frequency discrimination is a fundamental task of the auditory system. The mammalian inner ear, or cochlea, provides a place code in which different frequencies are detected at different spatial locations. However, a temporal code based on…

Neurons and Cognition · Quantitative Biology 2015-06-05 Tobias Reichenbach , A. J. Hudspeth

Biological systems represent time from microseconds to years. An important gap in our knowledge concerns the mechanisms for encoding time intervals of hundreds of milliseconds to minutes that matter for tasks like navigation, communication,…

Neurons and Cognition · Quantitative Biology 2025-05-22 Raphaël Lafond-Mercier , Leonard Maler , Avner Wallach , André Longtin

The mammalian brain is a metabolically expensive device, and evolutionary pressures have presumably driven it to make productive use of its resources. For sensory areas, this concept has been expressed more formally as an optimality…

Neurons and Cognition · Quantitative Biology 2016-03-02 Deep Ganguli , Eero P. Simoncelli

The brain has no direct access to physical stimuli, but only to the spiking activity evoked in sensory organs. It is unclear how the brain can structure its representation of the world based on differences between those noisy, correlated…

Neurons and Cognition · Quantitative Biology 2018-04-16 Christophe Gardella , Olivier Marre , Thierry Mora

Research aimed at scaling up neuroscience inspired learning algorithms for neural networks is accelerating. Recently, a key research area has been the study of energy-based learning algorithms such as predictive coding, due to their…

Machine Learning · Computer Science 2026-01-30 Luca Pinchetti , Simon Frieder , Thomas Lukasiewicz , Tommaso Salvatori

Over the brief time intervals available for processing retinal output, roughly 50 to 300 msec, the number of extra spikes generated by individual ganglion cells can be quite variable. Here, computer-generated spike trains were used to…

Neurons and Cognition · Quantitative Biology 2007-09-14 Garrett T. Kenyon

For 20 years the beautiful structure in the grid cell code has presented an attractive puzzle: what computation do these representations subserve, and why does it manifest so curiously in neurons. The first question quickly attracted an…

Neurons and Cognition · Quantitative Biology 2026-03-06 William Dorrell , James C. R. Whittington

The activity of neurons within brain circuits has been ubiquitously reported to be correlated. The impact of these correlations on brain function has been extensively investigated. Correlations can in principle increase or decrease the…

Neurons and Cognition · Quantitative Biology 2025-07-24 Miguel Ibáñez-Berganza , Giulio Bondanelli , Stefano Panzeri

Dedicated systems are fundamental for neuroscience experimental protocols that require timing determinism and synchronous stimuli generation. We developed a data acquisition and stimuli generator system for neuroscience research, optimized…

Quantitative Methods · Quantitative Biology 2015-04-08 Paulo Matias , Rafael Tuma Guariento , Lirio Onofre Baptista de Almeida , Jan Frans Willem Slaets

Adaptation in the retina is thought to optimize the encoding of natural light signals into sequences of spikes sent to the brain. However, adaptation also entails computational costs: adaptive code is intrinsically ambiguous, because output…

Neurons and Cognition · Quantitative Biology 2014-01-28 Gašper Tkačik , Anandamohan Ghosh , Elad Schneidman , Ronen Segev

The timing of individual neuronal spikes is essential for biological brains to make fast responses to sensory stimuli. However, conventional artificial neural networks lack the intrinsic temporal coding ability present in biological…

Neural and Evolutionary Computing · Computer Science 2020-11-18 Iulia M. Comsa , Krzysztof Potempa , Luca Versari , Thomas Fischbacher , Andrea Gesmundo , Jyrki Alakuijala

Spikes in the membrane electrical potentials of neurons play a major role in the functioning of nervous systems of animals. Obtaining the spikes from different neurons has been a challenging problem for decades. Several schemes have been…

Quantitative Methods · Quantitative Biology 2016-02-11 Anupam Mitra , Anagh Pathak , Kaushik Majumdar