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Replication crises have shaken the scientific landscape during the last decade. As potential solutions, open science practices were heavily discussed and have been implemented with varying success in different disciplines. We argue that…

Computers and Society · Computer Science 2023-10-05 David Schoch , Chung-hong Chan , Claudia Wagner , Arnim Bleier

The trend toward open science increases the pressure on authors to provide access to the source code and data they used to compute the results reported in their scientific papers. Since sharing materials reproducibly is challenging, several…

Digital Libraries · Computer Science 2020-07-15 Markus Konkol , Daniel Nüst , Laura Goulier

Many existing scientific workflows require High Performance Computing environments to produce results in a timely manner. These workflows have several software library components and use different environments, making the deployment and…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-03-26 Liliane Kunstmann , Débora Pina , Daniel de Oliveira , Marta Mattoso

Computational methods have reshaped the landscape of modern biology. While the biomedical community is increasingly dependent on computational tools, the mechanisms ensuring open data, open software, and reproducibility are variably…

Other Quantitative Biology · Quantitative Biology 2020-07-28 Jaqueline J. Brito , Jun Li , Jason H. Moore , Casey S. Greene , Nicole A. Nogoy , Lana X. Garmire , Serghei Mangul

Deploying complex, distributed scientific workflows across diverse HPC sites is often hindered by site-specific dependencies and complex build environments. This paper investigates the design and performance of portable HPC container images…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-03-13 Krishna Kant Singh , Eric Müller , Eleni Mathioulaki , Wouter Klijn , Lena Oden

Exascale computing will get mankind closer to solving important social, scientific and engineering problems. Due to high prototyping costs, High Performance Computing (HPC) system architects make use of simulation models for design space…

Performance · Computer Science 2018-03-28 Alexandra Ferreron , Radhika Jagtap , Sascha Bischoff , Roxana Rusitoru

Nowadays, we are to find out solutions to huge computing problems very rapidly. It brings the idea of parallel computing in which several machines or processors work cooperatively for computational tasks. In the past decades, there are a…

Programming Languages · Computer Science 2014-02-07 Brijender Kahanwal

Reproducibility remains a central challenge in machine learning (ML), especially in collaborative eScience projects where teams iterate over data, features, and models. Current ML workflows are often dynamic yet fragmented, relying on…

Machine Learning · Computer Science 2025-06-23 Zhiwei Li , Carl Kesselman , Tran Huy Nguyen , Benjamin Yixing Xu , Kyle Bolo , Kimberley Yu

Modern scientific applications predominantly run on large-scale computing platforms, necessitating collaboration between scientific domain experts and high-performance computing (HPC) experts. While domain experts are often skilled in…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-04-03 Yu Zhang , Zixiao Wang , Jin Zhao , Yuluo Guo , Hui Yu , Zhiying Huang , Xuanhua Shi , Xiaofei Liao

Reproducibility is a crucial aspect of scientific research that involves the ability to independently replicate experimental results by analysing the same data or repeating the same experiment. Over the years, many works have been proposed…

Digital Libraries · Computer Science 2024-07-16 Andrea Bianchi , Giordano d'Aloisio , Francesca Marzi , Antinisca Di Marco

With the increased interest in computational sciences, machine learning (ML), pattern recognition (PR) and big data, governmental agencies, academia and manufacturers are overwhelmed by the constant influx of new algorithms and techniques…

Software Engineering · Computer Science 2017-07-28 André Anjos , Laurent El-Shafey , Sébastien Marcel

A new class of Second generation high-performance computing applications with heterogeneous, dynamic and data-intensive properties have an extended set of requirements, which cover application deployment, resource allocation, -control, and…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-02-28 Ole Weidner , Malcolm Atkinson , Adam Barker , Rosa Filgueira

Recent developments in the commercial open source community have catalysed the use of Linux containers for scalable deployment of web-based applications to the cloud. Scientific software can be containerized with dependencies, configuration…

Software Engineering · Computer Science 2015-09-30 Robert Nagler , David Bruhwiler , Paul Moeller , Stephen Webb

Publishing reproducible analyses is a long-standing and widespread challenge for the scientific community, funding bodies and publishers. Although a definitive solution is still elusive, the problem is recognized to affect all disciplines…

Computers and Society · Computer Science 2017-07-24 C. Furlanello , M. De Domenico , G. Jurman , N. Bussola

The general purpose of a scientific publication is the exchange and spread of knowledge. A publication usually reports a scientific result and tries to convince the reader that it is valid. With an ever-growing number of papers relying on…

Digital Libraries · Computer Science 2018-08-24 Christian Schulz

The emergence of large-scale AI models, like GPT-4, has significantly impacted academia and industry, driving the demand for high-performance computing (HPC) to accelerate workloads. To address this, we present HPCClusterScape, a…

Human-Computer Interaction · Computer Science 2023-12-22 Heungseok Park , Aeree Cho , Hyojun Jeon , Hayoung Lee , Youngil Yang , Sungjae Lee , Heungsub Lee , Jaegul Choo

Quantum computing promises to provide the next step up in computational power for diverse application areas. In this review, we examine the science behind the quantum hype, and the breakthroughs required to achieve true quantum advantage in…

Quantum Physics · Physics 2025-09-26 R. Au-Yeung , B. Camino , O. Rathore , V. Kendon

The Open Computing Cluster for Advanced data Manipulation (OCCAM) is a multi-purpose flexible HPC cluster designed and operated by a collaboration between the University of Torino and the Sezione di Torino of the Istituto Nazionale di…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-12-06 Marco Aldinucci , Stefano Bagnasco , Stefano Lusso , Paolo Pasteris , Sergio Rabellino , Sara Vallero

Let's HPC (www.letshpc.org) is an open-access online platform to supplement conventional classroom oriented High Performance Computing (HPC) and Parallel & Distributed Computing (PDC) education. The web based platform provides online…

Computers and Society · Computer Science 2017-01-24 Akshar Varma , Yashwant Keswani , Yashodhan Bhatnagar , Bhaskar Chaudhury