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Joint species distribution models are popular in ecology for modeling covariate effects on species occurrence, while characterizing cross-species dependence. Data consist of multivariate binary indicators of the occurrences of different…

Methodology · Statistics 2025-07-08 Federica Stolf , David B. Dunson

Recent measurements of durations of non-equilibrium processes provide valuable information on microscopic mechanisms and energetics. Comprehensive theory for corresponding experiments so far is well developed for single-particle systems…

Statistical Mechanics · Physics 2020-09-04 David Voráč , Philipp Maass , Artem Ryabov

The study of Complex Systems is considered by many to be a new scientific field, and is distinguished by being a discipline that has applications within many separate areas of scientific study. The study of Neural Networks, Traffic…

Networking and Internet Architecture · Computer Science 2007-05-23 Jeffrey B. Smith

What determines biodiversity in nature is a prominent issue in ecology, especially in biotic resource systems that are typically devoid of cross-feeding. Here, we show that by incorporating pairwise encounters among consumer individuals…

Populations and Evolution · Quantitative Biology 2025-06-18 Ju Kang , Shijie Zhang , Yiyuan Niu , Xin Wang

Globular clusters are stellar dynamical systems which evolve on stellar evolutionary and both internal and external dynamical timescales. Quantitative comparison of cluster properties with realistic evolutionary dynamical models is becoming…

Astrophysics · Physics 2007-05-23 Gerard Gilmore

The study of spin-glass dynamics, long considered the paradigmatic complex system, has reached important milestones. The availability of single crystals has allowed the experimental measurement of spin-glass coherence lengths of almost…

Many human social phenomena, such as cooperation, the growth of settlements, traffic dynamics and pedestrian movement, appear to be accessible to mathematical descriptions that invoke self-organization. Here we develop a model of pedestrian…

Statistical Mechanics · Physics 2015-06-25 Dirk Helbing , Joachim Keltsch , Peter Molnar

The assembly of ecological communities from a pool of species is central to ecology, but the effect of this process on properties of community interaction networks is still largely unknown. Here, we use a systematic analytical framework to…

Populations and Evolution · Quantitative Biology 2016-07-19 Guy Bunin

We propose and study a model with glassy behavior. The state space of the model is given by all triangulations of a sphere with $n$ nodes, half of which are red and half are blue. Red nodes want to have 5 neighbors while blue ones want 7.…

Statistical Mechanics · Physics 2009-11-13 Jean-Pierre Eckmann

Noisy fluctuations are ubiquitous in complex systems. They play a crucial or delicate role in the dynamical evolution of gene regulation, signal transduction, biochemical reactions, among other systems. Therefore, it is essential to…

Dynamical Systems · Mathematics 2018-11-05 Jinqiao Duan , Hui Wang

Whether or not biodiversity dynamics tend toward stable equilibria remains an unsolved question in ecology and evolution with important implications for our understanding of diversity and its conservation. Phylo/population genetic models…

Populations and Evolution · Quantitative Biology 2017-05-16 A. J. Rominger , I. Overcast , H. Krehenwinkel , R. G. Gillespie , J. Harte , M. J. Hickerson

The composition of ecological communities varies not only between different locations but also in time. Understanding the fundamental processes that drive species towards rarity or abundance is crucial to assessing ecosystem resilience and…

Populations and Evolution · Quantitative Biology 2024-11-22 Emil Mallmin , Arne Traulsen , Silvia De Monte

Ecosystems are complex and dynamic systems. Over billions of years, they have developed advanced capabilities to provide stable functions, despite changes in their environment. In this paper, we argue that the laws of organization and…

Software Engineering · Computer Science 2012-07-11 Benoit Baudry , Martin Monperrus

Fluctuating environments are situations where the spatio-temporal stochasticity plays a significant role in the evolutionary dynamics. The study of the evolution of cooperation in these environments typically assumes a homogeneous, well…

Populations and Evolution · Quantitative Biology 2024-11-01 Viktor Stojkoski , Marko Karbevski , Zoran Utkovski , Lasko Basnarkov , Ljupco Kocarev

Structure, composition and stability of ecological populations are shaped by the inter- and intra-species interactions within these communities. It remains to be fully understood how the interplay of these interactions with other factors,…

Populations and Evolution · Quantitative Biology 2023-01-16 Nava Leibovich , Jeremy Rothschild , Sidhartha Goyal , Anton Zilman

Using the combinatorial properties of subsets of integers, a classification of metric dynamical systems was given in [V. Bergelson and T. Downarowicz, Large sets of integers and hierarchy of mixing properties of measure-preserving systems,…

Dynamical Systems · Mathematics 2017-10-06 Dawoud Ahmadi Dastjerdi , Maliheh Dabbaghian Amiri

How do social-ecological systems change over time? In 2002 Holling and colleagues proposed the concept of Panarchy, which presented social-ecological systems as an interacting set of adaptive cycles, each of which is produced by the dynamic…

Computation and Language · Computer Science 2020-12-29 Juan Rocha , Linda Luvuno , Jesse Rieb , Erin Crockett , Katja Malmborg , Michael Schoon , Garry Peterson

When making predictions about ecosystems, we often have available a number of different ecosystem models that attempt to represent their dynamics in a detailed mechanistic way. Each of these can be used as simulators of large-scale…

We study the effect of speciation, i.e. the introduction of new species through evolution into communities, in the setting of predator-prey systems. Predator-prey dynamics is classically well modeled by Lotka-Volterra equations, also when…

Populations and Evolution · Quantitative Biology 2025-03-20 Christian Hamster , Jorik Schaap , Peter van Heijster , Joshua Dijksman

Microbial ecosystems exhibit a surprising amount of functionally relevant diversity at all levels of taxonomic resolution, presenting a significant challenge for most modeling frameworks. A long-standing hope of theoretical ecology is that…

Populations and Evolution · Quantitative Biology 2025-10-09 Jacob Moran , Lucas C. Graham , Mikhail Tikhonov