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Motivation: Drug repurposing is a viable solution for reducing the time and cost associated with drug development. However, thus far, the proposed drug repurposing approaches still need to meet expectations. Therefore, it is crucial to…

Machine Learning · Computer Science 2024-05-21 Ali Gharizadeh , Karim Abbasi , Amin Ghareyazi , Mohammad R. K. Mofrad , Hamid R. Rabiee

One major technical challenge for modern analytical database systems is how to leverage GPU to exploit their massive parallelism and high bandwidth. Yet, existing GPU-driven database engines suffer from inefficiencies caused by frequent…

Databases · Computer Science 2026-05-12 Tsuyoshi Ozawa , Kazuo Goda

Graph embeddings map graph nodes to continuous vectors and are foundational to community detection, recommendation, and many scientific applications. At billion-scale, however, existing graph embedding systems face a trade-off: they either…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-03-13 Zhonggen Li , Xiangyu Ke , Yifan Zhu , Yunjun Gao , Feifei Li

Recent advances in dynamic graph processing have enabled the analysis of highly dynamic graphs with change at rates as high as millions of edge changes per second. Solutions in this domain, however, have been demonstrated only for…

Data Structures and Algorithms · Computer Science 2023-11-14 Juntong Luo , Scott Sallinen , Matei Ripeanu

This paper introduces GTX, a standalone main-memory write-optimized graph data system that specializes in structural and graph property updates while enabling concurrent reads and graph analytics through ACID transactions. Recent graph…

Databases · Computer Science 2025-02-25 Libin Zhou , Lu Xing , Yeasir Rayhan , Walid. G. Aref

Graph processing is typically considered to be a memory-bound rather than compute-bound problem. One common line of thought is that more available memory bandwidth corresponds to better graph processing performance. However, in this work we…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-10-10 Oded Green , James Fox , Jeffrey Young , Jun Shirako , David Bader

Heterogeneous computing platforms consisting of general purpose processors (GPPs) and graphics processing units (GPUs) have become commonplace in personal mobile devices and embedded systems. For years, programming of these platforms was…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-11-11 Jani Boutellier , Ilkka Hautala

Graphs are central to modeling relationships in scientific computing, data analysis, and AI/ML, but their growing scale can exceed the memory and compute capacity of single nodes, requiring distributed solutions. Existing distributed graph…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-27 Karame Mohammadiporshokooh , Panagiotis Syskakis , Hartmut Kaiser

Past decade has seen the development of many shared-memory graph processing frameworks, intended to reduce the effort of developing high performance parallel applications. However many of these frameworks, based on Vertex-centric or…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-11-21 Kartik Lakhotia , Sourav Pati , Rajgopal Kannan , Viktor Prasanna

Representation learning algorithms automatically learn the features of data. Several representation learning algorithms for graph data, such as DeepWalk, node2vec, and GraphSAGE, sample the graph to produce mini-batches that are suitable…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-05-12 Abhinav Jangda , Sandeep Polisetty , Arjun Guha , Marco Serafini

Current graph systems can easily process billions of data, however when increased to exceed hundred billions, the performance decreases dramatically, time series data always be very huge, consequently computation on time series graphs still…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-10-25 Derong Tang

Reduction operations are extensively employed in many computational problems. A reduction consists of, given a finite set of numeric elements, combining into a single value all elements in that set, using for this a combiner function. A…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-10-23 Walid Jradi , Hugo do Nascimento , Wellington Martins

The increasing size of input graphs for graph neural networks (GNNs) highlights the demand for using multi-GPU platforms. However, existing multi-GPU GNN systems optimize the computation and communication individually based on the…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-28 Yuke Wang , Boyuan Feng , Zheng Wang , Tong Geng , Kevin Barker , Ang Li , Yufei Ding

The growing data has brought tremendous pressure for query processing and storage, so there are many studies that focus on using GPU to accelerate join operation, which is one of the most important operations in modern database systems.…

Databases · Computer Science 2019-04-26 Hongzhi Wang , Ning Li , Zheng Wang , Jianing Li

The attention layer, a core component of Transformer-based LLMs, brings out inefficiencies in current GPU systems due to its low operational intensity and the substantial memory requirements of KV caches. We propose a High-bandwidth…

Hardware Architecture · Computer Science 2025-12-19 Myunghyun Rhee , Joonseop Sim , Taeyoung Ahn , Seungyong Lee , Daegun Yoon , Euiseok Kim , Kyoung Park , Youngpyo Joo , Hoshik Kim

Given the growing importance of large-scale graph analytics, there is a need to improve the performance of graph analysis frameworks without compromising on productivity. GraphMat is our solution to bridge this gap between a user-friendly…

Graph representation learning (a.k.a. network embedding) is a significant topic of network analysis, due to its effectiveness to support various graph inference tasks. In this paper, we study the representation learning with multiple…

Social and Information Networks · Computer Science 2023-05-17 Meng Qin

Applications in High-Performance Computing (HPC) environments face challenges due to increasing complexity. Among them, the increasing usage of sparse data pushes the limits of data structures and programming models and hampers the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-08-26 Alberto Scolari , Albert-Jan Yzelman

Graph-specific computing with the support of dedicated accelerator has greatly boosted the graph processing in both efficiency and energy. Nevertheless, their data conflict management is still sequential in essential when some vertex needs…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-06-05 Pengcheng Yao

We propose a new hybrid topology optimization algorithm based on multigrid approach that combines the parallelization strategy of CPU using OpenMP and heavily multithreading capabilities of modern Graphics Processing Units (GPU). In…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-02-01 Arya Prakash Padhi , Souvik Chakraborty , Anupam Chakrabarti , Rajib Chowdhury