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We propose a novel algorithm called Backpropagation Neural Tree (BNeuralT), which is a stochastic computational dendritic tree. BNeuralT takes random repeated inputs through its leaves and imposes dendritic nonlinearities through its…

Machine Learning · Computer Science 2024-04-30 Varun Ojha , Giuseppe Nicosia

Evolutionary histories for species that cross with one another or exchange genetic material can be represented by leaf-labelled, directed graphs called phylogenetic networks. A major challenge in the burgeoning area of phylogenetic networks…

Data Structures and Algorithms · Computer Science 2021-09-24 Leo van Iersel , Sjors Kole , Vincent Moulton , Leonie Nipius

Vector autoregression has been widely used for modeling and analysis of multivariate time series data. In high-dimensional settings, model parameter regularization schemes inducing sparsity yield interpretable models and achieved good…

Methodology · Statistics 2023-06-08 Leo L. Duan , Zeyu Yuwen , George Michailidis , Zhengwu Zhang

An important problem in evolutionary biology is to reconstruct the evolutionary history of a set $X$ of species. This history is often represented as a phylogenetic network, that is, a connected graph with leaves labelled by elements in $X$…

Combinatorics · Mathematics 2017-02-01 Leo van Iersel , Vincent Moulton

Discovering the underlying structures present in large real world graphs is a fundamental scientific problem. Recent work at the intersection of formal language theory and graph theory has found that a Hyperedge Replacement Grammar (HRG)…

Social and Information Networks · Computer Science 2017-06-30 Corey Pennycuff , Salvador Aguinaga , Tim Weninger

Automatic detection and segmentation of overlapping leaves in dense foliage can be a difficult task, particularly for leaves with strong textures and high occlusions. We present Dense-Leaves, an image dataset with ground truth segmentation…

Computer Vision and Pattern Recognition · Computer Science 2018-04-06 Daniel D. Morris

Patterns are fundamental to human cognition, enabling the recognition of structure and regularity across diverse domains. In this work, we focus on structural repeats, patterns that arise from the repetition of hierarchical relations within…

Computation and Language · Computer Science 2025-04-15 Zeng Ren , Xinyi Guan , Martin Rohrmeier

The tree-metric theorem provides a necessary and sufficient condition for a dissimilarity matrix to be a tree metric, and has served as the foundation for numerous distance-based reconstruction methods in phylogenetics. Our main result is…

Combinatorics · Mathematics 2007-05-23 Lior Pachter , David E Speyer

Deep neural networks and decision trees operate on largely separate paradigms; typically, the former performs representation learning with pre-specified architectures, while the latter is characterised by learning hierarchies over…

Neural and Evolutionary Computing · Computer Science 2019-06-11 Ryutaro Tanno , Kai Arulkumaran , Daniel C. Alexander , Antonio Criminisi , Aditya Nori

Leaves, i.e., vertices of degree one, can play a significant role in graph structure, especially in sparsely connected settings in which leaves often constitute the largest fraction of vertices. We consider a leaf-based counterpart of the…

Statistical Mechanics · Physics 2025-11-07 Harrison Hartle , P. L. Krapivsky

We propose a method to create document representations that reflect their internal structure. We modify Tree-LSTMs to hierarchically merge basic elements such as words and sentences into blocks of increasing complexity. Our Structure…

Computation and Language · Computer Science 2019-10-08 Khalil Mrini , Claudiu Musat , Michael Baeriswyl , Martin Jaggi

Humans recognize object structure from both their appearance and motion; often, motion helps to resolve ambiguities in object structure that arise when we observe object appearance only. There are particular scenarios, however, where…

Computer Vision and Pattern Recognition · Computer Science 2018-09-14 Tianfan Xue , Jiajun Wu , Zhoutong Zhang , Chengkai Zhang , Joshua B. Tenenbaum , William T. Freeman

This paper proposes the decision tree latent controller generative adversarial network (DTLC-GAN), an extension of a GAN that can learn hierarchically interpretable representations without relying on detailed supervision. To impose a…

Computer Vision and Pattern Recognition · Computer Science 2018-05-29 Takuhiro Kaneko , Kaoru Hiramatsu , Kunio Kashino

Graph generation is a critical task in numerous domains, including molecular design and social network analysis, due to its ability to model complex relationships and structured data. While most modern graph generative models utilize…

Machine Learning · Computer Science 2025-06-04 Xiaohui Chen , Yinkai Wang , Jiaxing He , Yuanqi Du , Soha Hassoun , Xiaolin Xu , Li-Ping Liu

Fine-grained visual categorization (FGVC) is an important but challenging task due to high intra-class variances and low inter-class variances caused by deformation, occlusion, illumination, etc. An attention convolutional binary neural…

Computer Vision and Pattern Recognition · Computer Science 2020-03-17 Ruyi Ji , Longyin Wen , Libo Zhang , Dawei Du , Yanjun Wu , Chen Zhao , Xianglong Liu , Feiyue Huang

Dependency trees convey rich structural information that is proven useful for extracting relations among entities in text. However, how to effectively make use of relevant information while ignoring irrelevant information from the…

Computation and Language · Computer Science 2020-09-08 Zhijiang Guo , Yan Zhang , Wei Lu

Many popular algorithms for searching the space of leaf-labelled trees are based on tree rearrangement operations. Under any such operation, the problem is reduced to searching a graph where vertices are trees and (undirected) edges are…

Data Structures and Algorithms · Computer Science 2020-07-27 Lena Collienne , Alex Gavryushkin

Retrieval-Augmented Generation (RAG) has demonstrated significant effectiveness in enhancing large language models (LLMs) for complex multi-hop question answering (QA). For multi-hop QA tasks, current iterative approaches predominantly rely…

Computation and Language · Computer Science 2026-01-19 Yuling Shi , Maolin Sun , Zijun Liu , Mo Yang , Yixiong Fang , Tianran Sun , Xiaodong Gu

Retrieval-Augmented Generation (RAG) enhances the factual grounding of Large Language Models by conditioning their outputs on external documents. However, standard embedding-based retrievers treat naturally structured corpora, such as…

Information Retrieval · Computer Science 2026-05-11 Giorgia Bolognesi , Claudio Estatico , Ulderico Fugacci , Isabella Mastroianni , Claudio Muselli , Luca Oneto

We propose and study a method for learning interpretable representations for the task of regression. Features are represented as networks of multi-type expression trees comprised of activation functions common in neural networks in addition…

Neural and Evolutionary Computing · Computer Science 2019-03-26 William La Cava , Tilak Raj Singh , James Taggart , Srinivas Suri , Jason H. Moore
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