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Here we present the training and evaluation of NanoNER, a Named Entity Recognition (NER) model for Nanobiology. NER consists in the identification of specific entities in spans of unstructured texts and is often a primary task in Natural…

Information Retrieval · Computer Science 2024-02-07 Martin Lentschat , Cyril Labbé , Ran Cheng

Weak supervision has shown promising results in many natural language processing tasks, such as Named Entity Recognition (NER). Existing work mainly focuses on learning deep NER models only with weak supervision, i.e., without any human…

Computation and Language · Computer Science 2021-08-03 Haoming Jiang , Danqing Zhang , Tianyu Cao , Bing Yin , Tuo Zhao

Motivation: State-of-the-art biomedical named entity recognition (BioNER) systems often require handcrafted features specific to each entity type, such as genes, chemicals and diseases. Although recent studies explored using neural network…

Information Retrieval · Computer Science 2018-10-09 Xuan Wang , Yu Zhang , Xiang Ren , Yuhao Zhang , Marinka Zitnik , Jingbo Shang , Curtis Langlotz , Jiawei Han

Named Entity Recognition (NER) is an important task in natural language processing that aims to identify and extract key entities from unstructured text. We present a novel application of NER in plasma physics research articles and address…

Computation and Language · Computer Science 2026-02-13 Muhammad Haris , Hans Höft , Markus M. Becker , Markus Stocker

The recognition of named entities in visually-rich documents (VrD-NER) plays a critical role in various real-world scenarios and applications. However, the research in VrD-NER faces three major challenges: complex document layouts,…

Computation and Language · Computer Science 2024-08-13 Yi Tu , Chong Zhang , Ya Guo , Huan Chen , Jinyang Tang , Huijia Zhu , Qi Zhang

A large amount of information in today's world is now stored in knowledge bases. Named Entity Recognition (NER) is a process of extracting, disambiguation, and linking an entity from raw text to insightful and structured knowledge bases.…

Computation and Language · Computer Science 2024-11-11 Monica Munnangi

When an entity name contains other names within it, the identification of all combinations of names can become difficult and expensive. We propose a new method to recognize not only outermost named entities but also inner nested ones. We…

Computation and Language · Computer Science 2020-07-13 Takashi Shibuya , Eduard Hovy

Named entity recognition (NER) of chemicals and drugs is a critical domain of information extraction in biochemical research. NER provides support for text mining in biochemical reactions, including entity relation extraction, attribute…

Computation and Language · Computer Science 2020-12-22 Jian Liu , Lei Gao , Sujie Guo , Rui Ding , Xin Huang , Long Ye , Qinghua Meng , Asef Nazari , Dhananjay Thiruvady

Despite impressive results of language models for named entity recognition (NER), their generalization to varied textual genres, a growing entity type set, and new entities remains a challenge. Collecting thousands of annotations in each…

Computation and Language · Computer Science 2022-04-28 Elena V. Epure , Romain Hennequin

Distantly-Supervised Named Entity Recognition (DS-NER) is widely used in real-world scenarios. It can effectively alleviate the burden of annotation by matching entities in existing knowledge bases with snippets in the text but suffer from…

Computation and Language · Computer Science 2025-07-04 Shuzheng Si , Helan Hu , Haozhe Zhao , Shuang Zeng , Kaikai An , Zefan Cai , Baobao Chang

Named entity recognition is a fundamental task in natural language processing, identifying the span and category of entities in unstructured texts. The traditional sequence labeling methodology ignores the nested entities, i.e. entities…

Computation and Language · Computer Science 2022-10-24 Xueru Wen , Changjiang Zhou , Haotian Tang , Luguang Liang , Yu Jiang , Hong Qi

Contrastive learning has become a popular solution for few-shot Name Entity Recognization (NER). The conventional configuration strives to reduce the distance between tokens with the same labels and increase the distance between tokens with…

Computation and Language · Computer Science 2023-08-02 Mingchen Li , Yang Ye , Jeremy Yeung , Huixue Zhou , Huaiyuan Chu , Rui Zhang

Named entity recognition (NER), a task that identifies and categorizes named entities such as persons or organizations from text, is traditionally framed as a multi-class classification problem. However, this approach often overlooks the…

Computation and Language · Computer Science 2023-11-10 Ngoc Dang Nguyen , Wei Tan , Lan Du , Wray Buntine , Richard Beare , Changyou Chen

Named entity recognition in real-world applications suffers from the diversity of entity types, the emergence of new entity types, and the lack of high-quality annotations. To address the above problems, this paper proposes an in-context…

Computation and Language · Computer Science 2023-05-29 Jiawei Chen , Yaojie Lu , Hongyu Lin , Jie Lou , Wei Jia , Dai Dai , Hua Wu , Boxi Cao , Xianpei Han , Le Sun

Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

Computation and Language · Computer Science 2023-12-27 Fahime Shahrokh , Nasser Ghadiri , Rasoul Samani , Milad Moradi

This paper presents a novel framework, MGNER, for Multi-Grained Named Entity Recognition where multiple entities or entity mentions in a sentence could be non-overlapping or totally nested. Different from traditional approaches regarding…

Computation and Language · Computer Science 2020-04-06 Congying Xia , Chenwei Zhang , Tao Yang , Yaliang Li , Nan Du , Xian Wu , Wei Fan , Fenglong Ma , Philip Yu

Named entity recognition (NER) is highly sensitive to sentential syntactic and semantic properties where entities may be extracted according to how they are used and placed in the running text. To model such properties, one could rely on…

Computation and Language · Computer Science 2020-10-30 Yuyang Nie , Yuanhe Tian , Yan Song , Xiang Ao , Xiang Wan

Biomedical named entity recognition (BNER) serves as the foundation for numerous biomedical text mining tasks. Unlike general NER, BNER require a comprehensive grasp of the domain, and incorporating external knowledge beyond training data…

Computation and Language · Computer Science 2023-07-06 Junyi Bian , Rongze Jiang , Weiqi Zhai , Tianyang Huang , Hong Zhou , Shanfeng Zhu

Recognizing named entities (NEs) is commonly conducted as a classification problem that predicts a class tag for a word or a NE candidate in a sentence. In shallow structures, categorized features are weighted to support the prediction.…

Computation and Language · Computer Science 2022-02-01 Yanping Chen , Lefei Wu , Qinghua Zheng , Ruizhang Huang , Jun Liu , Liyuan Deng , Junhui Yu , Yongbin Qing , Bo Dong , Ping Chen

Since its introduction, unsupervised representation learning has attracted a lot of attention from the research community, as it is demonstrated to be highly effective and easy-to-apply in tasks such as dimension reduction, clustering,…

Machine Learning · Computer Science 2018-11-07 Chin-Chia Michael Yeh , Yan Zhu , Evangelos E. Papalexakis , Abdullah Mueen , Eamonn Keogh
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