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In this paper we consider spatial networks that realize a balance between an infrastructure cost (the cost of wire needed to connect the network in space) and communication efficiency, measured by average shortest pathlength. A global…

Disordered Systems and Neural Networks · Physics 2015-05-19 Markus Brede

We consider the problem of learning underlying tree structure from noisy, mixed data obtained from a linear model. To achieve this, we use the expectation maximization algorithm combined with Chow-Liu minimum spanning tree algorithm. This…

Information Theory · Computer Science 2017-10-06 Navid Tafaghodi Khajavi

We give the first data structure for the problem of maintaining a dynamic set of n elements drawn from a partially ordered universe described by a tree. We define the Line-Leaf Tree, a linear-sized data structure that supports the…

Data Structures and Algorithms · Computer Science 2011-05-03 Brent Heeringa , Marius Catalin Iordan , Louis Theran

Searching in partially ordered structures has been considered in the context of information retrieval and efficient tree-like indexes, as well as in hierarchy based knowledge representation. In this paper we focus on tree-like partial…

Data Structures and Algorithms · Computer Science 2016-12-16 Ferdinando Cicalese , Balázs Keszegh , Bernard Lidický , Dömötör Pálvölgyi , Tomáš Valla

Tree balance plays an important role in different research areas like theoretical computer science and mathematical phylogenetics. For example, it has long been known that under the Yule model, a pure birth process, imbalanced trees are…

Populations and Evolution · Quantitative Biology 2020-12-18 Mareike Fischer

We give an $n^{2+o(1)}$-time algorithm for finding $s$-$t$ min-cuts for all pairs of vertices $s$ and $t$ in a simple, undirected graph on $n$ vertices. We do so by constructing a Gomory-Hu tree (or cut equivalent tree) in the same running…

Data Structures and Algorithms · Computer Science 2021-11-04 Jason Li , Debmalya Panigrahi , Thatchaphol Saranurak

We give an algorithm that, given an $n$-vertex graph $G$ and an integer $k$, in time $2^{O(k)} n$ either outputs a tree decomposition of $G$ of width at most $2k + 1$ or determines that the treewidth of $G$ is larger than $k$. This is the…

Data Structures and Algorithms · Computer Science 2023-08-24 Tuukka Korhonen

We compute the second order correction for the cover time of the binary tree of depth $n$ by (continuous-time) random walk, and show that with probability approaching 1 as $n$ increases, $\sqrt{\tau_{\mathrm{cov}}}=\sqrt{|E|}[\sqrt{2\log…

Probability · Mathematics 2011-04-05 Jian Ding , Ofer Zeitouni

We connect the problem of properly PAC learning decision trees to the parameterized Nearest Codeword Problem ($k$-NCP). Despite significant effort by the respective communities, algorithmic progress on both problems has been stuck: the…

Computational Complexity · Computer Science 2024-09-27 Caleb Koch , Carmen Strassle , Li-Yang Tan

Random forests and, more generally, (decision\nobreakdash-)tree ensembles are widely used methods for classification and regression. Recent algorithmic advances allow to compute decision trees that are optimal for various measures such as…

Machine Learning · Computer Science 2024-09-25 Christian Komusiewicz , Pascal Kunz , Frank Sommer , Manuel Sorge

Moss and Rabani[12] study constrained node-weighted Steiner tree problems with two independent weight values associated with each node, namely, cost and prize (or penalty). They give an O(log n)-approximation algorithm for the…

Data Structures and Algorithms · Computer Science 2013-04-30 MohammadHossein Bateni , MohammadTaghi Hajiaghayi , Vahid Liaghat

In classification and forecasting with tabular data, one often utilizes tree-based models. Those can be competitive with deep neural networks on tabular data and, under some conditions, explainable. The explainability depends on the depth…

Machine Learning · Computer Science 2024-06-05 Jiri Nemecek , Tomas Pevny , Jakub Marecek

k-means is a widely used clustering algorithm, but for $k$ clusters and a dataset size of $N$, each iteration of Lloyd's algorithm costs $O(kN)$ time. Although there are existing techniques to accelerate single Lloyd iterations, none of…

Data Structures and Algorithms · Computer Science 2016-01-18 Ryan R. Curtin

We give an algorithm for finding the arboricity of a weighted, undirected graph, defined as the minimum number of spanning forests that cover all edges of the graph, in $\sqrt{n} m^{1+o(1)}$ time. This improves on the previous best bound of…

Data Structures and Algorithms · Computer Science 2025-07-22 Ruoxu Cen , Henry Fleischmann , George Z. Li , Jason Li , Debmalya Panigrahi

Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

We present a simple 4-approximation algorithm for computing a maximum agreement forest of multiple unrooted binary trees. This algorithm applies LP rounding to an extension of a recent ILP formulation of the maximum agreement forest problem…

Data Structures and Algorithms · Computer Science 2024-09-16 Jordan Dempsey , Leo van Iersel , Mark Jones , Norbert Zeh

The (unweighted) tree edit distance problem for $n$ node trees asks to compute a measure of dissimilarity between two rooted trees with node labels. The current best algorithm from more than a decade ago runs in $O(n ^ 3)$ time [Demaine,…

Data Structures and Algorithms · Computer Science 2021-11-12 Xiao Mao

The problem of compression in standard information theory consists of assigning codes as short as possible to numbers. Here we consider the problem of optimal coding -- under an arbitrary coding scheme -- and show that it predicts Zipf's…

Computation and Language · Computer Science 2020-09-24 Ramon Ferrer-i-Cancho , Christian Bentz , Caio Seguin

We give a quasipolynomial-time algorithm for learning stochastic decision trees that is optimally resilient to adversarial noise. Given an $\eta$-corrupted set of uniform random samples labeled by a size-$s$ stochastic decision tree, our…

Machine Learning · Computer Science 2021-05-11 Guy Blanc , Jane Lange , Li-Yang Tan

In this paper, we investigate adaptive nonlinear regression and introduce tree based piecewise linear regression algorithms that are highly efficient and provide significantly improved performance with guaranteed upper bounds in an…

Machine Learning · Computer Science 2013-12-30 N. Denizcan Vanli , Suleyman S. Kozat