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In many materials systems, such as catalytic nanoparticles, the ability to characterize dynamic atomic structural changes is important for developing a more fundamental understanding of functionality. Recent developments in direct electron…

Materials Science · Physics 2020-03-31 Barnaby D. A. Levin , Ethan L. Lawrence , Peter A. Crozier

The motion of electrons in or near solids, liquids and gases can be tracked by forcing their ejection with attosecond x-ray pulses, derived from femtosecond lasers. The momentum of these emitted electrons carries the imprint of the…

Mesoscale and Nanoscale Physics · Physics 2017-06-14 C. W. Barlow-Myers , N. J. Pine , W. A. Bryan

This work presents a practical finite element modeling strategy, the Crack Element Method (CEM), for simulating the dynamic crack propagation in two-dimensional structures. The method employs an element-splitting algorithm based on the…

Computational Engineering, Finance, and Science · Computer Science 2025-08-04 Yuxi Xie , Ethan J. Wu , Lu Xu , Jimmy Perez , Shaofan Li

Electromagnetic transient (EMT) simulation is a crucial tool for power system dynamic analysis because of its detailed component modeling and high simulation accuracy. However, it suffers from computational burdens for large power grids…

Systems and Control · Electrical Eng. & Systems 2023-12-21 Min Xiong , Kaiyang Huang , Yang Liu , Rui Yao , Kai Sun , Feng Qiu

Particle-in-cell methods couple mesh-based methods for the solution of continuum mechanics problems, with the ability to advect and evolve particles. They have a long history and many applications in scientific computing. However, they have…

Numerical Analysis · Mathematics 2019-09-12 R. Gassmoeller , E. Heien , E. G. Puckett , W. Bangerth

The recently developed energy conserving semi-implicit method (ECsim) for PIC simulation is applied to multiple scale problems where the electron-scale physics needs to be only partially retained and the interest is on the macroscopic or…

Computational Physics · Physics 2017-05-24 Giovanni Lapenta , Diego Gonzalez-Herrero , Elisabetta Boella

Metriplectic systems are learned from data in a way that scales quadratically in both the size of the state and the rank of the metriplectic data. Besides being provably energy conserving and entropy stable, the proposed approach comes with…

Machine Learning · Computer Science 2025-01-28 Anthony Gruber , Kookjin Lee , Haksoo Lim , Noseong Park , Nathaniel Trask

The finite element methods (FEM) are important techniques in engineering for solving partial differential equations, but they depend heavily on element shape quality for stability and good performance. In this paper, we introduce the…

Numerical Analysis · Mathematics 2016-03-30 Rebecca Conley , Tristan J. Delaney , Xiangmin Jiao

We derive a factor graph EM (FGEM) algorithm, a technique that permits combined parameter estimation and statistical inference, to determine hidden kinetic microstates from patch clamp measurements. Using the cystic fibrosis transmembrane…

Quantitative Methods · Quantitative Biology 2021-06-18 Alexander S. Moffett , Guiying Cui , Peter J. Thomas , William D. Hunt , Nael A. McCarty , Ryan S. Westafer , Andrew W. Eckford

A simulation package employing a Particle in Cell (PIC) method is developed to study the high current beam transport and the dynamics of plasmas. This package includes subroutines those are suited for various planned projects at University…

Accelerator Physics · Physics 2016-06-21 N. Joshi

Fermionic quantum processors are a promising platform for quantum simulation of correlated fermionic matter. In this work, we study a hardware-efficient protocol for measuring complex expectation values of the time-evolution operator,…

The paper explores the problem of \emph{spectral compressed sensing}, which aims to recover a spectrally sparse signal from a small random subset of its $n$ time domain samples. The signal of interest is assumed to be a superposition of $r$…

Information Theory · Computer Science 2015-01-05 Yuxin Chen , Yuejie Chi

Accurate and efficient electroencephalography (EEG) analysis is essential for detecting seizures and artifacts in long-term monitoring, with applications spanning hospital diagnostics to wearable health devices. Robust EEG analytics have…

Machine Learning · Computer Science 2025-10-20 Anna Tegon , Thorir Mar Ingolfsson , Xiaying Wang , Luca Benini , Yawei Li

The Poisson-Nernst-Planck (PNP) equations are one of the most effective model for describing electrostatic interactions and diffusion processes in ion solution systems, and have been widely used in the numerical simulations of biological…

Numerical Analysis · Mathematics 2023-12-19 Yang Liu , Shi Shu , Ying Yang

A review of the present state of investigations of the pseudospin-electron model (PEM), which is used in the theory of strongly correlated electron systems, is given. The model is used to describe the systems with the locally anharmonic…

Strongly Correlated Electrons · Physics 2016-11-23 Ihor Stasyuk

The oversampling multiscale finite element method (MsFEM) is one of the most popular methods for simulating composite materials and flows in porous media which may have many scales. But the method may be inapplicable or inefficient in some…

Numerical Analysis · Mathematics 2012-11-16 Weibing Deng , Haijun Wu

We present an immersed boundary method to simulate the creeping motion of a rigid particle in a fluid described by the Stokes equations discretized thanks to a finite element strategy on unfitted meshes, called Phi-FEM, that uses the…

Numerical Analysis · Mathematics 2023-01-30 Michel Duprez , Vanessa Lleras , Alexei Lozinski

The computation of correspondences between shapes is a principal task in shape analysis. To this end, methods based on partial differential equations (PDEs) have been established, encompassing e.g. the classic heat kernel signature as well…

Numerical Analysis · Mathematics 2023-12-22 Alexander Köhler , Michael Breuß

In recent years, the immersed finite element methods (IFEM) introduced in \cite{Li2003}, \cite{Li2004} to solve elliptic problems having an interface in the domain due to the discontinuity of coefficients are getting more attentions of…

Numerical Analysis · Mathematics 2015-07-06 Do Y. Kwak , Juho Lee

Recent applications (e.g. active gels and self-assembly of elastic sheets) motivate the need to efficiently simulate the dynamics of thin elastic sheets. We present semi-implicit time stepping algorithms to improve the time step constraints…

Computational Physics · Physics 2019-10-23 Silas Alben , Alex A. Gorodetsky , Donghak Kim , Robert D. Deegan
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