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Complex systems, such as life and languages, are governed by principles of evolution. The analogy and comparison between biology and linguistics\cite{alphafold2, RoseTTAFold, lang_virus, cell language, faculty1, language of gene, Protein…

Populations and Evolution · Quantitative Biology 2026-03-18 Li-Min Wang , Hsing-Yi Lai , Sun-Ting Tsai , Chen Siang Ng , Kevin Sheng-Kai Ma , Shan-Jyun Wu , Meng-Xue Tsai , Yi-Ching Su , Daw-Wei Wang , Tzay-Ming Hong

An increase in diverse technology stacks and third-party library usage has led developers to inevitably switch technologies. To assist these developers, maintainers have started to release their libraries to multiple technologies, i.e., a…

R/qtl is an R package for mapping quantitative trait loci (genetic loci that contribute to variation in quantitative traits) in experimental crosses. Its development began in 2000. There have been 38 software releases since 2001. The latest…

Computation · Statistics 2014-07-10 Karl W. Broman

Current research on large language models (LLMs) with retrieval-augmented code generation (RACG) has largely focused on single-language settings, leaving their cross-lingual effectiveness underexplored. Multilingual RACG systems are…

Software Engineering · Computer Science 2026-04-21 Qiming Zhu , Jialun Cao , Xuanang Chen , Weili Zhang , Yaojie Lu , Hongyu Lin , Xianpei Han , Le Sun , Shing-Chi Cheung

This article explores the role of unrecognised labour in corporate innovation systems via an analysis of researcher coding and discursive contributions to R, one of the largest statistical software ecosystems. Studies of online platforms…

Software Engineering · Computer Science 2025-12-23 Xiaolan Cai , Mathieu O'Neil , Stefano Zacchiroli

Language change is influenced by many factors, but often starts from synchronic variation, where multiple linguistic patterns or forms coexist, or where different speech communities use language in increasingly different ways. Besides…

Social and Information Networks · Computer Science 2023-09-06 Andres Karjus , Christine Cuskley

Traditionally, statistical computing courses have taught the syntax of a particular programming language or specific statistical computation methods. Since the publication of Nolan and Temple Lang (2010), we have seen a greater emphasis on…

Computation · Statistics 2022-09-01 Alex Reinhart , Christopher R. Genovese

The automatic generation of computer programs is one of the main applications with practical relevance in the field of evolutionary computation. With program synthesis techniques not only software developers could be supported in their…

Neural and Evolutionary Computing · Computer Science 2021-08-30 Dominik Sobania , Dirk Schweim , Franz Rothlauf

Reproducibility is inseparable from transparency, as sharing data, code and computational environment is a pre-requisite for being able to retrace the steps of producing the research results. Others have made the case that this artifact…

Computers and Society · Computer Science 2022-05-19 Lorena A. Barba

The explosive rate of information growth and availability often makes it increasingly difficult to locate information pertinent to your needs. These problems are often compounded when keyword based search methodologies are not adequate for…

Information Retrieval · Computer Science 2008-10-10 Christopher M. Frenz

With the growth of natural language processing techniques and demand for improved software engineering efficiency, there is an emerging interest in translating intention from human languages to programming languages. In this survey paper,…

Software Engineering · Computer Science 2021-05-20 Celine Lee , Justin Gottschlich , Dan Roth

Context: Technical Debt is a metaphor used to describe code that is "not quite right." Although TD studies have gained momentum, TD has yet to be studied as thoroughly in non-Object-Oriented (OO) or scientific software such as R. R is a…

Software Engineering · Computer Science 2021-03-18 Zadia Codabux , Melina Vidoni , Fatemeh H. Fard

Existing innovation metrics inadequately capture software innovation, creating blind spots for researchers and policymakers seeking to understand and foster technological innovation in an increasingly software-defined economy. This paper…

Software Engineering · Computer Science 2025-07-01 Eva Maxfield Brown , Cailean Osborne , Peter Cihon , Moritz Böhmecke-Schwafert , Kevin Xu , Mirko Boehm , Knut Blind

The recent advancements in Transformer-based Language Models have demonstrated significant potential in enhancing the multilingual capabilities of these models. The remarkable progress made in this domain not only applies to natural…

Software Engineering · Computer Science 2023-08-28 Jonathan Katzy , Maliheh Izadi , Arie van Deursen

Languages and genes are both transmitted from generation to generation, with opportunity for differential reproduction and survivorship of forms. Here we apply a rigorous inference framework, drawn from population genetics, to distinguish…

Populations and Evolution · Quantitative Biology 2017-11-07 Christopher A. Ahern , Mitchell G. Newberry , Robin Clark , Joshua B. Plotkin

Regular expressions cause string-related bugs and open security vulnerabilities for DOS attacks. However, beyond ReDoS (Regular expression Denial of Service), little is known about the extent to which regular expression issues affect…

Software Engineering · Computer Science 2021-04-21 Peipei Wang , Chris Brown , Jamie A. Jennings , Kathryn T. Stolee

Large language models (LLMs) for code generation are becoming integral to modern software development, but their real-world prevalence and security impact remain poorly understood. We present the first large-scale empirical study of…

Software Engineering · Computer Science 2025-12-23 Bin Wang , Wenjie Yu , Yilu Zhong , Hao Yu , Keke Lian , Chaohua Lu , Hongfang Zheng , Dong Zhang , Hui Li

Python is a popular, widely used, and general-purpose programming language. In spite of its ever-growing community, researchers have not performed much analysis on Python's topics, trends, and technologies which provides insights for…

Software Engineering · Computer Science 2020-04-15 Hamed Tahmooresi , Abbas Heydarnoori , Alireza Aghamohammadi

Context: Reactive programming (RP) is a declarative programming paradigm suitable for expressing the handling of events. It enables programmers to create applications that react automatically to changes over time. Whenever a time-varying…

Programming Languages · Computer Science 2024-03-05 Bjarno Oeyen , Joeri De Koster , Wolfgang De Meuter

Computer programming initially required humans to directly translate their goals into machine code. These goals could have easily been expressed as a written (or human) language directive. Computers, however, had no capacity to…

Software Engineering · Computer Science 2024-08-22 Justin Del Vecchio , Andrew Perreault , Eliana Furmanek