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The foraging behavior of animals is a paradigm of target search in nature. Understanding which foraging strategies are optimal and how animals learn them are central challenges in modeling animal foraging. While the question of optimality…

Statistical Mechanics · Physics 2024-04-15 Gorka Muñoz-Gil , Andrea López-Incera , Lukas J. Fiderer , Hans J. Briegel

Human memory retrieval often resembles ecological foraging where animals search for food in a patchy environment. Optimal foraging means following the Marginal Value Theorem (MVT), in which individuals exploit a patch of semantically…

Artificial Intelligence · Computer Science 2025-11-18 James Moore

Nature is in constant flux, so animals must account for changes in their environment when making decisions. How animals learn the timescale of such changes and adapt their decision strategies accordingly is not well understood. Recent…

Neurons and Cognition · Quantitative Biology 2018-12-24 Zachary P. Kilpatrick , William R. Holmes , Tahra L. Eissa , Krešimir Josić

Conservation science depends on an accurate understanding of what's happening in a given ecosystem. How many species live there? What is the makeup of the population? How is that changing over time? Species Distribution Modeling (SDM) seeks…

Machine Learning · Computer Science 2021-07-23 Sara Beery , Elijah Cole , Joseph Parker , Pietro Perona , Kevin Winner

1. Spatial memory plays a role in the way animals perceive their environments, resulting in memory-informed movement patterns that are observable to ecologists. Developing mathematical techniques to understand how animals use memory in…

Quantitative Methods · Quantitative Biology 2022-02-17 Peter R. Thompson , Andrew E. Derocher , Mark A. Edwards , Mark A. Lewis

Habitat selection models are used in ecology to link the distribution of animals to environmental covariates, and identify habitats that are important for conservation. The most widely used models of this type, resource selection functions,…

Applications · Statistics 2018-10-26 Théo Michelot , Paul G. Blackwell , Simon Chamaillé-Jammes , Jason Matthiopoulos

Thanks to recent technological advances, it is now possible to track with an unprecedented precision and for long periods of time the movement patterns of many living organisms in their habitat. The increasing amount of data available on…

Populations and Evolution · Quantitative Biology 2015-05-19 Denis Boyer , Peter D. Walsh

Both resources in the natural environment and concepts in a semantic space are distributed "patchily", with large gaps in between the patches. To describe people's internal and external foraging behavior, various random walk models have…

Machine Learning · Computer Science 2017-10-17 Jian-Qiao Zhu , Adam N. Sanborn , Nick Chater

The two dominant approaches for the analysis of species-habitat associations in animals have been shown to reach divergent conclusions. Models fitted from the viewpoint of an individual (step selection functions), once scaled up, do not…

Quantitative Methods · Quantitative Biology 2018-06-27 Théo Michelot , Paul G. Blackwell , Jason Matthiopoulos

Bayesian Decision Trees (DTs) are generally considered a more advanced and accurate model than a regular Decision Tree (DT) because they can handle complex and uncertain data. Existing work on Bayesian DTs uses Markov Chain Monte Carlo…

Machine Learning · Computer Science 2023-05-31 Efthyvoulos Drousiotis , Alexander M. Phillips , Paul G. Spirakis , Simon Maskell

Patch foraging involves the deliberate and planned process of determining the optimal time to depart from a resource-rich region and investigate potentially more beneficial alternatives. The Marginal Value Theorem (MVT) is frequently used…

Artificial Intelligence · Computer Science 2025-12-30 Yesid Fonseca , Manuel S. Ríos , Nicanor Quijano , Luis F. Giraldo

Macroscopic dynamical descriptions of complex physical systems are crucial for understanding and controlling material behavior. With the growing availability of data and compute, machine learning has become a promising alternative to…

Computational Physics · Physics 2026-03-24 Mengyi Chen , Pengru Huang , Kostya S. Novoselov , Qianxiao Li

Information theory has explained the organization of many biological phenomena, from the physiology of sensory receptive fields to the variability of certain DNA sequence ensembles. Some scholars have proposed that information should…

Other Quantitative Biology · Quantitative Biology 2010-10-25 Edward K. Agarwala , Hillel J. Chiel , Peter J. Thomas

Species distribution models (SDMs), which aim to predict species occurrence based on environmental variables, are widely used to monitor and respond to biodiversity change. Recent deep learning advances for SDMs have been shown to perform…

Machine Learning · Computer Science 2025-11-14 Catherine Villeneuve , Benjamin Akera , Mélisande Teng , David Rolnick

The brain constantly turns large flows of sensory information into selective representations of the environment. It, therefore, needs to learn to process those sensory inputs that are most relevant for behaviour. It is not well understood…

Neurons and Cognition · Quantitative Biology 2023-01-10 Pouya Baniasadi

Improved communication systems, shrinking battery sizes and the price drop of tracking devices have led to an increasing availability of trajectory tracking data. These data are often analyzed to understand animal behavior. In this work, we…

Applications · Statistics 2019-09-12 Gianluca Mastrantonio , Clara Grazian , Sara Mancinelli , Enrico Bibbona

Foraging is a fundamental behavior as animals' search for food is crucial for their survival. Patch leaving is a canonical foraging behavior, but classic theoretical conceptions of patch leaving decisions lack some key naturalistic details.…

Neurons and Cognition · Quantitative Biology 2020-04-23 Zachary P Kilpatrick , Jacob D Davidson , Ahmed El Hady

The Markov Decision Process (MDP) is a popular framework for sequential decision-making problems, and uncertainty quantification is an essential component of it to learn optimal decision-making strategies. In particular, a Bayesian…

Machine Learning · Statistics 2025-05-06 Jiaqi Guo , Chon Wai Ho , Sumeetpal S. Singh

In the reinforcement learning literature, there are many algorithms developed for either Contextual Bandit (CB) or Markov Decision Processes (MDP) environments. However, when deploying reinforcement learning algorithms in the real world,…

Machine Learning · Computer Science 2022-08-02 Kelly W. Zhang , Omer Gottesman , Finale Doshi-Velez

Bayes-optimal behavior, while well-defined, is often difficult to achieve. Recent advances in the use of Monte-Carlo tree search (MCTS) have shown that it is possible to act near-optimally in Markov Decision Processes (MDPs) with very large…

Artificial Intelligence · Computer Science 2012-02-20 John Asmuth , Michael L. Littman
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