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Despite the considerable progress in automatic abdominal multi-organ segmentation from CT/MRI scans in recent years, a comprehensive evaluation of the models' capabilities is hampered by the lack of a large-scale benchmark from diverse…

Image and Video Processing · Electrical Eng. & Systems 2022-09-05 Yuanfeng Ji , Haotian Bai , Jie Yang , Chongjian Ge , Ye Zhu , Ruimao Zhang , Zhen Li , Lingyan Zhang , Wanling Ma , Xiang Wan , Ping Luo

Automated abdominal multi-organ segmentation is a crucial yet challenging task in the computer-aided diagnosis of abdominal organ-related diseases. Although numerous deep learning models have achieved remarkable success in many medical…

Image and Video Processing · Electrical Eng. & Systems 2022-12-26 Shishuai Hu , Zehui Liao , Yong Xia

Segmentation of multiple organs-at-risk (OARs) is essential for radiation therapy treatment planning and other clinical applications. We developed an Automated deep Learning-based Abdominal Multi-Organ segmentation (ALAMO) framework based…

Image and Video Processing · Electrical Eng. & Systems 2020-08-25 Yuhua Chen , Dan Ruan , Jiayu Xiao , Lixia Wang , Bin Sun , Rola Saouaf , Wensha Yang , Debiao Li , Zhaoyang Fan

Multi-organ segmentation enables organ evaluation, accounts the relationship between multiple organs, and facilitates accurate diagnosis and treatment decisions. However, only few models can perform segmentation accurately because of the…

Image and Video Processing · Electrical Eng. & Systems 2022-10-25 Junya Sato , Shoji Kido

Semantic segmentation is one of the most popular research areas in medical image computing. Perhaps surprisingly, despite its conceptualization dating back to 2018, nnU-Net continues to provide competitive out-of-the-box solutions for a…

Image and Video Processing · Electrical Eng. & Systems 2022-08-24 Fabian Isensee , Constantin Ulrich , Tassilo Wald , Klaus H. Maier-Hein

The annotation of patient organs is a crucial part of various diagnostic and treatment procedures, such as radiotherapy planning. Manual annotation is extremely time-consuming, while its automation using modern image analysis techniques has…

Computer Vision and Pattern Recognition · Computer Science 2024-11-19 Leila Khaertdinova , Ilya Pershin , Tatiana Shmykova , Bulat Ibragimov

Segmentation of abdominal organs has been a comprehensive, yet unresolved, research field for many years. In the last decade, intensive developments in deep learning (DL) have introduced new state-of-the-art segmentation systems. In order…

This manuscript presents an image segmentation algorithm developed for the Cross-Organ and Cross-Scanner Adenocarcinoma Segmentation (COSAS 2024) challenge. We adopted an organ-stratified and scanner-stratified approach to train multiple…

Computer Vision and Pattern Recognition · Computer Science 2024-09-20 Huang Jiayan , Ji Zheng , Kuang Jinbo , Xu Shuoyu

The segmentation foundation model, e.g., Segment Anything Model (SAM), has attracted increasing interest in the medical image community. Early pioneering studies primarily concentrated on assessing and improving SAM's performance from the…

Image and Video Processing · Electrical Eng. & Systems 2024-06-19 Qin Li , Yizhe Zhang , Yan Li , Jun Lyu , Meng Liu , Longyu Sun , Mengting Sun , Qirong Li , Wenyue Mao , Xinran Wu , Yajing Zhang , Yinghua Chu , Shuo Wang , Chengyan Wang

Deep learning has enabled great strides in abdominal multi-organ segmentation, even surpassing junior oncologists on common cases or organs. However, robustness on corner cases and complex organs remains a challenging open problem for…

Image and Video Processing · Electrical Eng. & Systems 2024-06-21 Xiangde Luo , Zihan Li , Shaoting Zhang , Wenjun Liao , Guotai Wang

Background: Segmentation of organs and structures in abdominal MRI is useful for many clinical applications, such as disease diagnosis and radiotherapy. Current approaches have focused on delineating a limited set of abdominal structures…

Image and Video Processing · Electrical Eng. & Systems 2025-08-07 Yan Zhuang , Tejas Sudharshan Mathai , Pritam Mukherjee , Brandon Khoury , Boah Kim , Benjamin Hou , Nusrat Rabbee , Abhinav Suri , Ronald M. Summers

Recent advances in computer-aided diagnosis for histopathology have been largely driven by the use of deep learning models for automated image analysis. While these networks can perform on par with medical experts, their performance can be…

Image and Video Processing · Electrical Eng. & Systems 2024-09-17 Frauke Wilm , Mathias Öttl , Marc Aubreville , Katharina Breininger

In recent years, "U-shaped" neural networks featuring encoder and decoder structures have gained popularity in the field of medical image segmentation. Various variants of this model have been developed. Nevertheless, the evaluation of…

Image and Video Processing · Electrical Eng. & Systems 2023-06-02 Qi Ye , Lihua Guo

Purpose: To develop and evaluate a deep learning model for multi-organ segmentation of MRI scans. Materials and Methods: The model was trained on 1,200 manually annotated 3D axial MRI scans from the UK Biobank, 221 in-house MRI scans, and…

Objective : Abdominal anatomy segmentation is crucial for numerous applications from computer-assisted diagnosis to image-guided surgery. In this context, we address fully-automated multi-organ segmentation from abdominal CT and MR images…

Image and Video Processing · Electrical Eng. & Systems 2020-01-29 Pierre-Henri Conze , Ali Emre Kavur , Emilie Cornec-Le Gall , Naciye Sinem Gezer , Yannick Le Meur , M. Alper Selver , François Rousseau

Organ and cancer segmentation in abdomen Computed Tomography (CT) scans is the prerequisite for precise cancer diagnosis and treatment. Most existing benchmarks and algorithms are tailored to specific cancer types, limiting their ability to…

Image and Video Processing · Electrical Eng. & Systems 2024-08-23 Jun Ma , Yao Zhang , Song Gu , Cheng Ge , Ershuai Wang , Qin Zhou , Ziyan Huang , Pengju Lyu , Jian He , Bo Wang

The Segment Anything Model (SAM) is the first foundation model for general image segmentation. It has achieved impressive results on various natural image segmentation tasks. However, medical image segmentation (MIS) is more challenging…

Image and Video Processing · Electrical Eng. & Systems 2024-01-18 Yuhao Huang , Xin Yang , Lian Liu , Han Zhou , Ao Chang , Xinrui Zhou , Rusi Chen , Junxuan Yu , Jiongquan Chen , Chaoyu Chen , Sijing Liu , Haozhe Chi , Xindi Hu , Kejuan Yue , Lei Li , Vicente Grau , Deng-Ping Fan , Fajin Dong , Dong Ni

Segmentation of abdominal computed tomography(CT) provides spatial context, morphological properties, and a framework for tissue-specific radiomics to guide quantitative Radiological assessment. A 2015 MICCAI challenge spurred substantial…

Image and Video Processing · Electrical Eng. & Systems 2020-02-12 Yuchen Xu , Olivia Tang , Yucheng Tang , Ho Hin Lee , Yunqiang Chen , Dashan Gao , Shizhong Han , Riqiang Gao , Michael R. Savona , Richard G. Abramson , Yuankai Huo , Bennett A. Landman

Background: The segment-anything model (SAM), introduced in April 2023, shows promise as a benchmark model and a universal solution to segment various natural images. It comes without previously-required re-training or fine-tuning specific…

Image and Video Processing · Electrical Eng. & Systems 2023-05-09 Sheng He , Rina Bao , Jingpeng Li , Jeffrey Stout , Atle Bjornerud , P. Ellen Grant , Yangming Ou

For more clinical applications of deep learning models for medical image segmentation, high demands on labeled data and computational resources must be addressed. This study proposes a coarse-to-fine framework with two teacher models and a…

Image and Video Processing · Electrical Eng. & Systems 2022-11-14 Jae Won Choi
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