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Phase interfaces in melting and solidification processes are strongly affected by the presence of convection in the liquid. One way of modeling their transient evolution is to couple an incompressible flow model to an energy balance in…

Fluid Dynamics · Physics 2018-01-11 Alexander G. Zimmerman , Julia Kowalski

Automating experimental protocol design and execution remains as a fundamental bottleneck in realizing self-driving laboratories. We introduce PRISM (Protocol Refinement through Intelligent Simulation Modeling), a framework that automates…

The phase field model can accurately simulate the evolution of microstructures with complex morphologies, and it has been widely used for cell modeling in the last two decades. However, compared to other cellular models such as the…

Biological Physics · Physics 2022-06-13 Xiangyu Kuang , Guoye Guan , Chao Tang , Lei Zhang

Pixel-aligned implicit models, such as PIFu, PIFuHD, and ICON, are used for single-view clothed human reconstruction. These models need to be trained using a sampling training scheme. Existing sampling training schemes either fail to…

Computer Vision and Pattern Recognition · Computer Science 2024-11-12 Kennard Yanting Chan , Fayao Liu , Guosheng Lin , Chuan Sheng Foo , Weisi Lin

Rapid reconstruction of 2D plasma profiles from line-integral measurements is important in nuclear fusion. This paper introduces a physics-informed model architecture called Onion, that can enhance the performance of models and be adapted…

This paper introduces a perspective approach for simulating a memristive sensor tailored for low power biological analyte detection. The necessity for such innovation stems from the increasing demand for efficient biosensing technologies…

Applied Physics · Physics 2024-08-13 Manel Bouzouita , Fakhreddine Zayer , Hamdi Belgacem

Motivation: The size of available omics datasets is steadily increasing with technological advancement in recent years. While this increase in sample size can be used to improve the performance of relevant prediction tasks in healthcare,…

Quantitative Methods · Quantitative Biology 2023-05-04 Jonas C. Ditz , Bernhard Reuter , Nico Pfeifer

The optimal selection of experimental conditions is essential to maximizing the value of data for inference and prediction, particularly in situations where experiments are time-consuming and expensive to conduct. We propose a general…

Machine Learning · Statistics 2012-12-04 Xun Huan , Youssef M. Marzouk

The rapid growth of scientific software has created practical barriers for bioinformatics research. Although powerful statistical, artificial intelligence (AI)-based methods are now widely available, their effective use is often hindered by…

Software Engineering · Computer Science 2026-04-24 Simon Süwer , Zoe Chervontseva , Kester Bagemihl , Jan Baumbach , Olga Tsoy , Andreas Maier

Tactile perception plays an important role in medical simulation and training, specifically in surgery. The surgeon must feel organic tissue hardness, evaluate anatomical structures, measure tissue properties, and apply appropriate force…

Human-Computer Interaction · Computer Science 2018-12-11 Felix G. Hamza-Lup , Adrian Seitan , Dorin M. Popovici , Crenguta M. Bogdan

We introduce the software toolbox HAZniCS for solving interface-coupled multiphysics problems. HAZniCS is a suite of modules that combines the well-known FEniCS framework for finite element discretization with solver and graph library…

Numerical Analysis · Mathematics 2022-11-08 Ana Budisa , Xiaozhe Hu , Miroslav Kuchta , Kent-Andre Mardal , Ludmil Zikatanov

Scientists and engineers employ stochastic numerical simulators to model empirically observed phenomena. In contrast to purely statistical models, simulators express scientific principles that provide powerful inductive biases, improve…

Sparse neural networks can greatly facilitate the deployment of neural networks on resource-constrained platforms as they offer compact model sizes while retaining inference accuracy. Because of the sparsity in parameter matrices, sparse…

Machine Learning · Computer Science 2021-09-10 Febin Sunny , Mahdi Nikdast , Sudeep Pasricha

Neuro-symbolic Artificial Intelligence (AI) models, blending neural networks with symbolic AI, have facilitated transparent reasoning and context understanding without the need for explicit rule-based programming. However, implementing such…

In the health domain, decisions are often based on different data modalities. Thus, when creating prediction models, multimodal fusion approaches that can extract and combine relevant features from different data modalities, can be highly…

Artificial Intelligence · Computer Science 2024-02-20 Mafalda Malafaia , Thalea Schlender , Peter A. N. Bosman , Tanja Alderliesten

Many robotic surgical systems have been developed with micro-sized forceps for tissue manipulation. However, these systems often lack force sensing at the tool side and the manipulation forces are roughly estimated and controlled relying on…

Robotics · Computer Science 2024-01-26 Tangyou Liu , Tinghua Zhang , Jay Katupitiya , Jiaole Wang , Liao Wu

We propose a perception imitation method to simulate results of a certain perception model, and discuss a new heuristic route of autonomous driving simulator without data synthesis. The motivation is that original sensor data is not always…

Robotics · Computer Science 2023-04-20 Xiaoliang Ju , Yiyang Sun , Yiming Hao , Yikang Li , Yu Qiao , Hongsheng Li

Spiking Neural Networks (SNNs) are computational models inspired by the structure and dynamics of biological neuronal networks. Their event-driven nature enables them to achieve high energy efficiency, particularly when deployed on…

Neural and Evolutionary Computing · Computer Science 2025-06-18 Ashish Gautam , Prasanna Date , Shruti Kulkarni , Robert Patton , Thomas Potok

The simulation of morphogenetic problems requires the simultaneous and coupled simulation of signalling and tissue dynamics. A cellular resolution of the tissue domain is important to adequately describe the impact of cell-based events,…

Quantitative Methods · Quantitative Biology 2015-03-29 Simon Tanaka , David Sichau , Dagmar Iber

Labelling data is expensive and time consuming especially for domains such as medical imaging that contain volumetric imaging data and require expert knowledge. Exploiting a larger pool of labeled data available across multiple centers,…

Computer Vision and Pattern Recognition · Computer Science 2020-09-03 Daiqing Li , Amlan Kar , Nishant Ravikumar , Alejandro F Frangi , Sanja Fidler