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The identification of essential genes/proteins is a critical step towards a better understanding of human biology and pathology. Computational approaches helped to mitigate experimental constraints by exploring machine learning (ML) methods…

Molecular Networks · Quantitative Biology 2021-08-02 João Schapke , Anderson Tavares , Mariana Recamonde-Mendoza

Spatio-temporal forecasting of future values of spatially correlated time series is important across many cyber-physical systems (CPS). Recent studies offer evidence that the use of graph neural networks to capture latent correlations…

Machine Learning · Computer Science 2023-12-29 Minbo Ma , Jilin Hu , Christian S. Jensen , Fei Teng , Peng Han , Zhiqiang Xu , Tianrui Li

Graph-based neural network models are gaining traction in the field of representation learning due to their ability to uncover latent topological relationships between entities that are otherwise challenging to identify. These models have…

Image and Video Processing · Electrical Eng. & Systems 2023-07-25 Aryan Singh , Pepijn Van de Ven , Ciarán Eising , Patrick Denny

EEG-based emotion recognition holds significant promise for objective diagnosis of mood disorders. Graph neural networks (GNNs) have emerged as the dominant paradigm for modeling inter-channel dependencies in EEG, yet existing approaches…

Machine Learning · Computer Science 2026-05-26 Ziyi Wang , Dongyang Kuang

Entity interaction prediction is essential in many important applications such as chemistry, biology, material science, and medical science. The problem becomes quite challenging when each entity is represented by a complex structure,…

Machine Learning · Computer Science 2021-04-13 Hanchen Wang , Defu Lian , Ying Zhang , Lu Qin , Xuemin Lin

Recent work on predicting patient outcomes in the Intensive Care Unit (ICU) has focused heavily on the physiological time series data, largely ignoring sparse data such as diagnoses and medications. When they are included, they are usually…

Machine Learning · Computer Science 2021-01-12 Emma Rocheteau , Catherine Tong , Petar Veličković , Nicholas Lane , Pietro Liò

In a networked system, functionality can be seriously endangered when nodes are infected, due to internal random failures or a contagious virus that develops into an epidemic. Given a snapshot of the network representing the nodes' states…

Social and Information Networks · Computer Science 2019-12-13 Seyyedali Hosseinalipour , Jie Wang , Yuanzhe Tian , Huaiyu Dai

In diagnosing neurological disorders from electroencephalography (EEG) data, foundation models such as Transformers have been employed to capture temporal dynamics. Additionally, Graph Neural Networks (GNNs) are critical for representing…

Machine Learning · Computer Science 2025-02-19 Toyotaro Suzumura , Hiroki Kanezashi , Shotaro Akahori

Clinical notes in Electronic Health Records (EHRs) capture rich temporal information on events, clinician reasoning, and lifestyle factors often missing from structured data. Leveraging them for predictive modeling can be impactful for…

Computation and Language · Computer Science 2026-05-08 Rochana Chaturvedi , Yue Zhou , Andrew D. Boyd , Brian T. Layden , Mudassir Rashid , Lu Cheng , Ali Cinar , Barbara Di Eugenio

This study focuses on the challenge of predicting network traffic within complex topological environments. It introduces a spatiotemporal modeling approach that integrates Graph Convolutional Networks (GCN) with Gated Recurrent Units (GRU).…

Machine Learning · Computer Science 2025-05-13 Nan Jiang , Wenxuan Zhu , Xu Han , Weiqiang Huang , Yumeng Sun

In the intensive care setting, sepsis continues to be a major contributor to patient illness and death; however, its timely detection is hindered by the complex, sparse, and heterogeneous nature of electronic health record (EHR) data. We…

Machine Learning · Computer Science 2025-12-08 Bozhi Dan , Di Wu , Ji Xu , Xiang Liu , Yiziting Zhu , Xin Shu , Yujie Li , Bin Yi

Local neighborhoods play a crucial role in embedding generation in graph-based learning. It is commonly believed that nodes ought to have embeddings that resemble those of their neighbors. In this research, we try to carefully expand the…

Social and Information Networks · Computer Science 2024-01-04 Yassin Mohamadi , Mostafa Haghir Chehreghani

Scene graphs have proven to be highly effective for various scene understanding tasks due to their compact and explicit representation of relational information. However, current methods often overlook the critical importance of preserving…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Quang P. M. Pham , Khoi T. N. Nguyen , Lan C. Ngo , Truong Do , Dezhen Song , Truong-Son Hy

Our main goal is to examine the role of communities in epidemic spread in a random graph model. More precisely, we consider a random graph model which consists of overlapping complete graphs, representing households, workplaces, school…

Physics and Society · Physics 2023-08-25 Ágnes Backhausz , György J. Székely

Spatial-temporal graph modeling is an important task to analyze the spatial relations and temporal trends of components in a system. Existing approaches mostly capture the spatial dependency on a fixed graph structure, assuming that the…

Machine Learning · Computer Science 2019-06-04 Zonghan Wu , Shirui Pan , Guodong Long , Jing Jiang , Chengqi Zhang

Epilepsy diagnosis and treatment require evidence-intensive reasoning across heterogeneous clinical knowledge, including biosignal patterns, genetic mechanisms, pharmacogenomics, treatment strategies, and patient outcomes. In this work, we…

Artificial Intelligence · Computer Science 2026-05-14 Yuyang Dai , Zheng Chen , Jathurshan Pradeepkumar , Yasuko Matsubara , Jimeng Sun , Yasushi Sakurai , Yushun Dong

The worldwide impact of the recent COVID-19 pandemic has been substantial, necessitating the development of accurate forecasting models to predict the spread and course of a pandemic. Previous methods for outbreak forecasting have faced…

Machine Learning · Computer Science 2024-08-28 Ashutosh Anshul , Jhalak Gupta , Mohammad Zia Ur Rehman , Nagendra Kumar

Traffic forecasting is an important prerequisite for the application of intelligent transportation systems in urban traffic networks. The existing works adopted RNN and CNN/GCN, among which GCRN is the state of art work, to characterize the…

Artificial Intelligence · Computer Science 2020-09-18 Ya Zhang , Mingming Lu , Haifeng Li

Accurate bearing load monitoring is essential for their Prognostics and Health Management (PHM), enabling damage assessment, wear prediction, and proactive maintenance. While bearing sensors are typically placed on the bearing housing,…

Machine Learning · Computer Science 2025-03-07 Mengjie Zhao , Cees Taal , Stephan Baggerohr , Olga Fink

The contact structure between hosts has a critical influence on disease spread. However, most networkbased models used in epidemiology tend to ignore heterogeneity in the weighting of contacts. This assumption is known to be at odds with…

Populations and Evolution · Quantitative Biology 2012-09-03 Christel Kamp , Mathieu Moslonka-Lefebvre , Samuel Alizon
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