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Biological molecular machines are enzymes that simultaneously catalyze two processes, one donating free energy and second accepting it. Recent studies show that most native protein enzymes have a rich stochastic dynamics that often…

Biological Physics · Physics 2018-12-21 Michal Kurzynski , Przemyslaw Chelminiak

Non-linear local electromagnetic gyrokinetic turbulence simulations of the ITER standard scenario H-mode are presented for the q=3/2 and q=2 surfaces. The turbulent transport is examined in regions of velocity space characteristic of…

Plasma Physics · Physics 2015-01-08 F. J. Casson , E. Poli , C. Angioni , R. Buchholz , A. G. Peeters

Morphogen profiles allow cells to determine their position within a developing organism, but the mechanisms behind the formation of these profiles are still not well agreed upon. Here we derive fundamental limits to the precision of…

Biological Physics · Physics 2018-06-26 Sean Fancher , Andrew Mugler

Chlorosomes are the largest and most efficient natural light-harvesting antenna systems. They contain thousands of pigment molecules - bacteriochlorophylls (BChls)- that are organized into supramolecular aggregates and form a very efficient…

Chemical Physics · Physics 2014-05-13 Takatoshi Fujita , Joonsuk Huh , Semion K. Saikin , Jennifer C. Brookes , Alan Aspuru-Guzik

Large scale motion of cytoplasm called cytoplasmic streaming occurs in some large eukaryotic cells to stir the cell's constituents. In Drosophila oocytes, microtubules have been observed to undergo undulating motion, curving to form…

Subcellular Processes · Quantitative Biology 2012-07-11 J. M. Deutsch , M. E. Brunner , William M. Saxton

Transport processes underpin a multitude of phenomena, ranging from the propagation of atoms on lattices, to the mobility patterns of microorganisms and earthquakes, to name a few. The dynamics of these processes is very rich and key to…

The vast majority of modern microelectronic devices rely on carriers within semiconductors due to their integrability. Therefore, the performance of these devices is limited due to natural semiconductor properties such as band gap and…

Optics · Physics 2016-11-23 Ebrahim Forati , Tyler J. Dill , Andrea Tao , Dan Sievenpiper

Transient electric fields across cell bilayer membranes can lead to electroporation, as well as to cell fusion, and have been extensively studied. We find that transmembrane electric fields similar to those in cells can lead to a massive,…

Materials Science · Physics 2023-06-27 Yu Zhang , Di Jin , Ran Tivony , Nir Kampf , Jacob Klein

The theoretical study of laser-induced heating of a transport cargo microcontainer constituting a hollow dielectric microcapsule with water filling and a light absorbing polymer shell is presented. By means of FDTD and FEM techniques, the…

Optics · Physics 2020-04-24 Yury E. Geints

Spindles are self-organized microtubule-based structures that segregate chromosomes during cell division. The mass of the spindle is controlled by the balance between microtubule turnover and nucleation. The mechanisms that control the…

Subcellular Processes · Quantitative Biology 2018-06-13 Bryan Kaye , Olivia Stiehl , Peter J. Foster , Michael J. Shelley , Daniel J. Needleman , Sebastian Fürthauer

Three-level Lambda systems provide a versatile platform for quantum optical phenomena such as Electromagnetically Induced Transparency (EIT), slow light, and quantum memory. Such Lambda systems have been realized in several quantum hardware…

Quantum Physics · Physics 2025-12-16 Ching-Yeh Chen , Shih-Wei Lin , Ching-Ping Lee , J. C. Chen , I. -C. Hoi , Yen-Hsiang Lin

Molecular dynamics simulations are used to study the mechanism and kinetics of hydrated electron diffusion. The electron center of mass is found to exhibit Brownian-type behavior with a diffusion coefficient considerably greater than that…

Chemical Physics · Physics 2012-11-06 Kafui A. Tay , François-Xavier Coudert , Anne Boutin

The electronic transport of electrons and holes through stacks of $\alpha$,$\ome ga$-dicyano-$\beta$,$\beta$'-dibutyl- quaterthiophene (DCNDBQT) as part of a nov el organic ferroic field-effect transistor (OFFET) is investigated. The novel…

Materials Science · Physics 2015-05-14 T. Kunze , S. Gemming , V. Pankoke , K. Morawetz , R. Luschtinetz , G. Seifert

Energy storage and release in dielectric materials can be described on the basis of the charge trapping mechanism. Most phenomenological aspects have been recently rationalized in terms of the space charge model~\cite{blaise,blaise1}.…

mtrl-th · Physics 2008-02-03 C. Rambaut , K. H. Oh , H. Jaffrezic , J. Kohanoff , S. Fayeulle

Photosynthetic organisms rely on a series of self-assembled nanostructures with tuned electronic energy levels in order to transport energy from where it is collected by photon absorption, to reaction centers where the energy is used to…

Anomalously slow passive diffusion, $\langle \delta x^2(t)\rangle\simeq t^{\alpha}$, with $0<\alpha<1$, of larger tracers such as messenger RNA and endogenous submicron granules in the cytoplasm of living biological cells has been…

Biological Physics · Physics 2014-09-24 Igor Goychuk , Vasyl O. Kharchenko , Ralf Metzler

Elucidating quantum coherence effects and geometrical factors for efficient energy transfer in photosynthesis has the potential to uncover non-classical design principles for advanced organic materials. We study energy transfer in a linear…

Biological Physics · Physics 2013-07-30 Qing Ai , Tzu-Chi Yen , Bih-Yaw Jin , Yuan-Chung Cheng

We discuss possible quantum mechanical aspects of MicroTubules (MT), based on recent developments in quantum physics.We focus on potential mechanisms for `energy-loss-free' transport along the microtubules, which could be considered as…

Quantum Physics · Physics 2009-10-30 N. E. Mavromatos , D. V. Nanopoulos

Multicellular cable bacteria display an exceptional form of biological conduction, channeling electrical currents across centimeter distances through a regular network of protein fibers embedded in the cell envelope. The fiber conductivity…

Microtubules are highly regulated dynamic elements of the cytoskeleton of eukaryotic cells. One of the regulation mechanisms observed in living cells is the severing by the proteins katanin and spastin. We introduce a model for the dynamics…

Subcellular Processes · Quantitative Biology 2010-03-12 Simon H. Tindemans , Bela M. Mulder