Related papers: Approximate Circular Pattern Matching
We present a near-linear time algorithm that approximates the edit distance between two strings within a polylogarithmic factor; specifically, for strings of length n and every fixed epsilon>0, it can compute a (log n)^O(1/epsilon)…
We study algorithms for approximating pairwise similarity matrices that arise in natural language processing. Generally, computing a similarity matrix for $n$ data points requires $\Omega(n^2)$ similarity computations. This quadratic…
We consider the problem of computing distance between a pattern of length $n$ and all $n$-length subwords of a text in the streaming model. In the streaming setting, only the Hamming distance ($L_0$) has been studied. It is known that…
We consider a class of pattern matching problems where a normalising transformation is applied at every alignment. Normalised pattern matching plays a key role in fields as diverse as image processing and musical information processing…
We present a substantially more efficient variant, both in terms of running time and size of preprocessing advice, of the algorithm by Liu, Lyubashevsky, and Micciancio for solving CVPP (the preprocessing version of the Closest Vector…
Given a finite metric space $(X\cup Y, \mathbf{d})$ the $k$-median problem is to find a set of $k$ centers $C\subseteq Y$ that minimizes $\sum_{p\in X} \min_{c\in C} \mathbf{d}(p,c)$. In general metrics, the best polynomial time algorithm…
We study approximation algorithms for the following geometric version of the maximum coverage problem: Let $\mathcal{P}$ be a set of $n$ weighted points in the plane. Let $D$ represent a planar object, such as a rectangle, or a disk. We…
Correlation Clustering is a classic clustering objective arising in numerous machine learning and data mining applications. Given a graph $G=(V,E)$, the goal is to partition the vertex set into clusters so as to minimize the number of edges…
Fault-tolerant quantum computing relies on Quantum Error Correction, which encodes logical qubits into data and parity qubits. Error decoding is the process of translating the measured parity bits into types and locations of errors. To…
We study the problem of approximating edit distance in sublinear time. This is formalized as the $(k,k^c)$-Gap Edit Distance problem, where the input is a pair of strings $X,Y$ and parameters $k,c>1$, and the goal is to return YES if…
We study the problem of approximating Hamming distance in sublinear time under property-preserving hashing (PPH), where only hashed representations of inputs are available. Building on the threshold evaluation framework of Fleischhacker,…
Following recent advances in combining approximation algorithms with fixed-parameter tractability (FPT), we study FPT-time approximation algorithms for minimum-norm $k$-clustering problems, parameterized by the number $k$ of open…
We study the $c$-approximate near neighbor problem under the continuous Fr\'echet distance: Given a set of $n$ polygonal curves with $m$ vertices, a radius $\delta > 0$, and a parameter $k \leq m$, we want to preprocess the curves into a…
Aligning a sequence to a walk in a labeled graph is a problem of fundamental importance to Computational Biology. For finding a walk in an arbitrary graph with $|E|$ edges that exactly matches a pattern of length $m$, a lower bound based on…
The metric $k$-median problem is a textbook clustering problem. As input, we are given a metric space $V$ of size $n$ and an integer $k$, and our task is to find a subset $S \subseteq V$ of at most $k$ `centers' that minimizes the total…
Given a set of $n$ points in the plane, and a parameter $k$, we consider the problem of computing the minimum (perimeter or area) axis-aligned rectangle enclosing $k$ points. We present the first near quadratic time algorithm for this…
We revisit the complexity of one of the most basic problems in pattern matching. In the k-mismatch problem we must compute the Hamming distance between a pattern of length m and every m-length substring of a text of length n, as long as…
A distance matrix $A \in \mathbb R^{n \times m}$ represents all pairwise distances, $A_{ij}=\mathrm{d}(x_i,y_j)$, between two point sets $x_1,...,x_n$ and $y_1,...,y_m$ in an arbitrary metric space $(\mathcal Z, \mathrm{d})$. Such matrices…
We consider the streaming complexity of a fundamental task in approximate pattern matching: the $k$-mismatch problem. It asks to compute Hamming distances between a pattern of length $n$ and all length-$n$ substrings of a text for which the…
In this paper we consider two metric covering/clustering problems - \textit{Minimum Cost Covering Problem} (MCC) and $k$-clustering. In the MCC problem, we are given two point sets $X$ (clients) and $Y$ (servers), and a metric on $X \cup…