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Microstructure.jl is a Julia package designed for probabilistic estimation of tissue microstructural parameters from diffusion or combined diffusion-relaxometry MRI data. It provides a flexible and extensible framework for defining…

Medical Physics · Physics 2025-05-01 Ting Gong , Anastasia Yendiki

Normalizing flows can be used to construct unbiased, reduced-variance estimators for lattice field theory observables that are defined by a derivative with respect to action parameters. This work implements the approach for observables…

We propose a formally valid machine-learning-assisted global proposal mechanism for Monte Carlo sampling in lattice gauge theory. The construction is based on a coupling-flow update on the SU(2) lattice-link manifold, in which active links…

High Energy Physics - Lattice · Physics 2026-05-27 Seung-il Nam

We present DataDeps.jl: a julia package for the reproducible handling of static datasets to enhance the repeatability of scripts used in the data and computational sciences. It is used to automate the data setup part of running software…

Software Engineering · Computer Science 2018-08-06 Lyndon White , Roberto Togneri , Wei Liu , Mohammed Bennamoun

The Lattice Boltzmann Method (LBM) is a computational technique of Computational Fluid Dynamics (CFD) that has gained popularity due to its high parallelism and ability to handle complex geometries with minimal effort. Although LBM…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-09-26 Luigi Crisci , Biagio Cosenza , Giorgio Amati , Matteo Turisini

Recent advances in inverse problem solving have increasingly adopted flow priors over diffusion models due to their ability to construct straight probability paths from noise to data, thereby enhancing efficiency in both training and…

Computer Vision and Pattern Recognition · Computer Science 2025-11-11 Hossein Askari , Yadan Luo , Hongfu Sun , Fred Roosta

Machine learning (ML) is increasingly becoming a common tool in computational chemistry. At the same time, the rapid development of ML methods requires a flexible software framework for designing custom workflows. MLatom 3 is a program…

This work presents a quantum mechanical framework for analyzing quantization-based optimization algorithms. The sampling process of the quantization-based search is modeled as a gradient-flow dissipative system, leading to a…

Quantum Physics · Physics 2026-03-13 Jinwuk Seok , Changsik Cho

Hamilton's equations are fundamental for modeling complex physical systems, where preserving key properties such as energy and momentum is crucial for reliable long-term simulations. Geometric integrators are widely used for this purpose,…

Machine Learning · Computer Science 2026-03-17 Priscilla Canizares , Davide Murari , Carola-Bibiane Schönlieb , Ferdia Sherry , Zakhar Shumaylov

We define a class of machine-learned flow-based sampling algorithms for lattice gauge theories that are gauge-invariant by construction. We demonstrate the application of this framework to U(1) gauge theory in two spacetime dimensions, and…

Stock and flow diagrams are already an important tool in epidemiology, but category theory lets us go further and treat these diagrams as mathematical entities in their own right. In this chapter we use communicable disease models created…

Logic in Computer Science · Computer Science 2024-12-12 John C. Baez , Xiaoyan Li , Sophie Libkind , Nathaniel D. Osgood , Eric Redekopp

This year marks the consolidation of Julia (https://julialang.org/), a programming language designed for scientific computing, as the first stable version (1.0) has been released, in August 2018. Among its main features, expressiveness and…

Instrumentation and Methods for Astrophysics · Physics 2018-12-05 Maurizio Tomasi , Mosè Giordano

Implementing large-scale quantum circuits is one of the challenges of quantum computing. One of the central challenges of accurately modeling the architecture of these circuits is to schedule a quantum application and generate the layout…

Quantum Physics · Physics 2013-06-11 Maryam Yazdani , Morteza Saheb Zamani , Mehdi Sedighi

A numerical model and parallel software for 3D simulations of granular flows have been developed based on the Lagrangian particle (LP) method [R.Samulyak, X. Wang, H.-C. Chen, Lagrangian particle method for compressible fluid dynamics, J.…

Computational Physics · Physics 2022-06-29 Mario Zepeda , Roman Samulyak

The Julia programming language has evolved into a modern alternative to fill existing gaps in scientific computing and data science applications. Julia leverages a unified and coordinated single-language and ecosystem paradigm and has a…

Emerging sampling algorithms based on normalizing flows have the potential to solve ergodicity problems in lattice calculations. Furthermore, it has been noted that flows can be used to compute thermodynamic quantities which are difficult…

High Energy Physics - Lattice · Physics 2023-10-02 Jan M. Pawlowski , Julian M. Urban

GPflow is a Gaussian process library that uses TensorFlow for its core computations and Python for its front end. The distinguishing features of GPflow are that it uses variational inference as the primary approximation method, provides…

We study the consequences of mode-collapse of normalizing flows in the context of lattice field theory. Normalizing flows allow for independent sampling. For this reason, it is hoped that they can avoid the tunneling problem of local-update…

High Energy Physics - Lattice · Physics 2023-11-06 Kim A. Nicoli , Christopher J. Anders , Tobias Hartung , Karl Jansen , Pan Kessel , Shinichi Nakajima

We report the quantum computing of reacting flows by simulating the Hamiltonian dynamics. The scalar transport equation for reacting flows is transformed into a Hamiltonian system, mapping the dissipative and non-Hermitian problem in…

Fluid Dynamics · Physics 2024-07-30 Zhen Lu , Yue Yang

This study established a quantum-classical hybrid framework that integrates quantum computing paradigm with meshfree finite particle method. By harnessing quantum superposition and entanglement, it hybridized the critical computational…

Fluid Dynamics · Physics 2025-09-16 Yudong Li , Wenkui Shi , Yan Li , Chunfa Wang , Ling Tao , Zhuojia Fu , Moubin Liu , Zhiqiang Feng