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There is a gap in scientific information systems development concerning modern software engineering and scientific computing. Historically, software engineering methodologies have been perceived as an unwanted accidental complexity to…

Context: Research software is essential for developing advanced tools and models to solve complex research problems and drive innovation across domains. Therefore, it is essential to ensure its correctness. Software testing plays a vital…

Software Engineering · Computer Science 2025-01-30 Nasir U. Eisty , Upulee Kanewala , Jeffrey C. Carver

Background: Classifications in meta-research enable researchers to cope with an increasing body of scientific knowledge. They provide a framework for, e.g., distinguishing methods, reports, reproducibility, and evaluation in a knowledge…

Software Engineering · Computer Science 2022-09-22 Angelika Kaplan , Thomas Kühn , Ralf Reussner

The evidence-based approach has increasingly been employed to synthesize empirical findings from the primary research in software engineering. Nevertheless, the reproducibility of evidence-based software engineering (EBSE) studies seems to…

Software Engineering · Computer Science 2021-03-03 Zheng Li

As software has become an integral part of scientific workflows, reproducible research practices must take it into account. In what way? Archiving source code is a necessary but insufficient condition. The ability to redeploy software…

Software Engineering · Computer Science 2021-12-09 Ludovic Courtès

Scientific processes rely on software as an important tool for data acquisition, analysis, and discovery. Over the years sustainable software development practices have made progress in being considered as an integral component of research.…

Software Engineering · Computer Science 2023-12-21 Akash Dhruv , Anshu Dubey

Energy research software (ERS) is a central cornerstone to facilitate energy research. However, ERS is developed by researchers who, in many cases, lack formal training in software engineering. This reduces the quality of ERS, leading to…

Software Engineering · Computer Science 2025-07-25 Stephan Ferenz , Emilie Frost , Rico Schrage , Thomas Wolgast , Inga Beyers , Oliver Karras , Oliver Werth , Astrid Nieße

Challenges related to development, deployment, and maintenance of reusable software for science are becoming a growing concern. Many scientists' research increasingly depends on the quality and availability of software upon which their…

Context: The Evidence-Based Software Engineering (EBSE) paradigm and the planning phase of a systematic literature review. Objective: A protocol to do a systematic literature review with detailed information about the processes suggested by…

Software Engineering · Computer Science 2017-04-05 José L. Barros-Justo , Samuel Sepúlveda , Nelson Martínez-Araujo , Alejandro González-García

Background: Research software is software developed by and/or used by researchers, across a wide variety of domains, to perform their research. Because of the complexity of research software, developers cannot conduct exhaustive testing. As…

Software Engineering · Computer Science 2021-10-29 Nasir U. Eisty , Jeffrey C. Carver

The reuse of research software is central to research efficiency and academic exchange. The application of software enables researchers with varied backgrounds to reproduce, validate, and expand upon study findings. Furthermore, the…

Modern science is relying on software more than ever. The behavior and outcomes of this software shape the scientific and public discourse on important topics like climate change, economic growth, or the spread of infections. Most…

Software Engineering · Computer Science 2025-01-09 Adrian Bajraktari , Michelle Binder , Andreas Vogelsang

Computational science and engineering (CSE) has been misunderstood to advance with the construction of enormous computers. To the contrary, the historical record demonstrates that innovations in CSE come from improvements to the mathematics…

History and Overview · Mathematics 2011-08-11 Joseph F. Grcar

Software Engineering (SE) research involving the use of Large Language Models (LLMs) has introduced several new challenges related to rigour in benchmarking, contamination, replicability, and sustainability. In this paper, we invite the…

Software Engineering · Computer Science 2026-01-21 David Williams , Max Hort , Maria Kechagia , Aldeida Aleti , Justyna Petke , Federica Sarro

A large number of computational scientific research projects make use of open source software packages. However, the development process of such tools frequently differs from conventional software development; partly because of the nature…

Software Engineering · Computer Science 2013-09-24 Ivan Girotto , Axel Kohlmeyer , David Grellscheid , Shawn T. Brown

An essential part of research and scientific communication is researchers' ability to reproduce the results of others. While there have been increasing standards for authors to make data and code available, many of these files are hard to…

Digital Libraries · Computer Science 2021-09-23 Layan Bahaidarah , Ethan Hung , Andreas F. De Melo Oliveira , Jyotsna Penumaka , Lukas Rosario , Ana Trisovic

Computational methods and associated software implementations are central to every field of scientific investigation. Modern biological research, particularly within systems biology, has relied heavily on the development of software tools…

Computers and Society · Computer Science 2025-03-07 Kit Gallagher , Richard Creswell , Ben Lambert , Martin Robinson , Chon Lok Lei , Gary R. Mirams , David J. Gavaghan

Quantum computing (QC) is no longer only a scientific interest but is rapidly becoming an industrially available technology that can potentially tackle the limitations of classical computing. Over the last few years, major technology giants…

Software Engineering · Computer Science 2022-11-28 Muhammad Azeem Akbar , Arif Ali Khan , Sajjad Mahmood , Saima Rafi