Related papers: Perfect shuffling with fewer lazy transpositions

Various approaches to alignment-free sequence comparison are based on the length of exact or inexact word matches between two input sequences. Haubold {\em et al.} (2009) showed how the average number of substitutions between two DNA…

Superpermutations are words over a finite alphabet containing every permutation as a factor. Finding the minimal length of a superpermutation is still an open problem. In this article, we introduce superpermutations matrices. We establish a…

A sequence $\pi_1,\pi_2,\dots$ of permutations is said to be "quasirandom" if the induced density of every permutation $\sigma$ in $\pi_n$ converges to $1/|\sigma|!$ as $n\to\infty$. We prove that $\pi_1,\pi_2,\dots$ is quasirandom if and…

The classical result of Erdos and Renyi shows that the random graph G(n,p) experiences sharp phase transition around p=1/n - for any \epsilon>0 and p=(1-\epsilon)/n, all connected components of G(n,p) are typically of size O(log n), while…

Consider two independent random strings having same length and taking values uniformly in a common finite alphabet. We study the order of the variance of the length of the longest common subsequences (LCS) of these strings when long blocks,…

We define the ``shift-match number'' for a binary string and we compute the probability of occurrence of a given string as a subsequence in longer strings in terms of its shift-match number. We thus prove that the string matching…

We study decomposable combinatorial labeled structures in the exp-log class, specifically, two examples of type a=1 and two examples of type a=1/2. Our approach is to establish how well existing theory matches experimental data. For…

The authors propose a new variation of random walks called ladder chains $L(r,s,p)$. We extend concepts such as ruin probability, hitting time, transience and recurrence of random walks to ladder chain. Take $L(2,2,p)$ for instance, we find…

Consider the number of permutations in the symmetric group on n letters that contain c copies of a given pattern. As c varies (with n held fixed) these numbers form a sequence whose properties we study for the monotone patterns and the…

In the random hypergraph $H_{n,p;k}$ each possible $k$-tuple appears independently with probability $p$. A loose Hamilton cycle is a cycle in which every pair of adjacent edges intersects in a single vertex. We prove that if $p n^{k-1}/\log…

A bijection is given between fixed point free involutions of $\{1,2,...,2N\}$ with maximum decreasing subsequence size $2p$ and two classes of vicious (non-intersecting) random walker configurations confined to the half line lattice points…

Our work is motivated by Bourque and Pevzner's (2002) simulation study of the effectiveness of the parsimony method in studying genome rearrangement, and leads to a surprising result about the random transposition walk on the group of…

In the random hypergraph H=H(n,p;3) each possible triple appears independently with probability p. A loose Hamilton cycle can be described as a sequence of edges {x_i,y_i,x_{i+1}\} for i=1,2,...,n/2. We prove that there exists an absolute…

The transpose top-$2$ with random shuffle (J. Theoret. Probab., 2020) is a lazy random walk on the alternating group $A_n$ generated by $3$-cycles of the form $(\star,n-1,n)$ and $(\star,n,n-1)$. We obtain the limit profile of this random…

We consider the problem of counting the occurrences of patterns of the form $xy-z$ within flattened permutations of a given length. Using symmetric functions, we find recurrence relations satisfied by the distributions on $\mathcal{S}_n$…

Let the random variable $Z_{n,k}$ denote the number of increasing subsequences of length $k$ in a random permutation from $S_n$, the symmetric group of permutations of $\{1,...,n\}$. We show that $Var(Z_{n,k_n})=o((EZ_{n,k_n})^2)$ as $…

We present a sublinear randomized algorithm to compute a sparse Fourier transform for nonequispaced data. Suppose a signal S is known to consist of N equispaced samples, of which only L<N are available. If the ratio p=L/N is not close to 1,…

Given a real number beta>1, a permutation pi of length n is realized by the beta-shift if there is some x in [0,1] such that the relative order of the sequence x,f(x),...,f^{n-1}(x), where f(x) is the factional part of beta*x, is the same…

We prove that deciding whether a given input word contains as subsequence every possible permutation of integers $\{1,2,\ldots,n\}$ is coNP-complete. The coNP-completeness holds even when given the guarantee that the input word contains as…

We give an algorithm A which assigns probabilities to logical sentences. For any simple infinite sequence of sentences whose truth-values appear indistinguishable from a biased coin that outputs "true" with probability p, we have that the…