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The mathematical modelling of genetic-metabolic networks is of out most importance in the field of systems biology. Different formalisms and a huge variety of classical mathematical tools have been used to describe and analyse such…

Molecular Networks · Quantitative Biology 2017-11-15 Marco Polo Castillo-Villalba , Laura Gómez-Romero , Julio Collado-Vides

If (Q,A) is a marked polygon with one interior point, then a general polynomial f in K[x,y] with support A defines an elliptic curve C on the toric surface X_A. If K has a non-archimedean valuation into the real numbers we can tropicalize C…

Combinatorics · Mathematics 2010-03-12 Eric Katz , Hannah Markwig , Thomas Markwig

We give methods for Bayesian inference of directed acyclic graphs, DAGs, and the induced causal effects from passively observed complete data. Our methods build on a recent Markov chain Monte Carlo scheme for learning Bayesian networks,…

Machine Learning · Computer Science 2020-11-19 Jussi Viinikka , Antti Hyttinen , Johan Pensar , Mikko Koivisto

When the historical data are limited, the conditional probabilities associated with the nodes of Bayesian networks are uncertain and can be empirically estimated. Second order estimation methods provide a framework for both estimating the…

Machine Learning · Statistics 2022-08-09 Conrad D. Hougen , Lance M. Kaplan , Federico Cerutti , Alfred O. Hero

Our purpose is to study the family of simple undirected graphs whose toric ideal is a complete intersection from both an algorithmic and a combinatorial point of view. We obtain a polynomial time algorithm that, given a graph $G$, checks…

Commutative Algebra · Mathematics 2015-07-14 Isabel Bermejo , Ignacio García-Marco , Enrique Reyes

Low-dimensional probability models for local distribution functions in a Bayesian network include decision trees, decision graphs, and causal independence models. We describe a new probability model for discrete Bayesian networks, which we…

Machine Learning · Statistics 2019-10-23 David Heckerman , Chris Meek

A construction is proposed for linear connections on non-commutative algebras. The construction relies on a generalisation of the Leibnitz rules of commutative geometry and uses the bimodule structure of $\Omega^1$. A special role is played…

High Energy Physics - Theory · Physics 2010-04-06 J. Mourad

Twist tori are examples of exotic monotone lagrangian tori, presented in [1]. This tree of examples grew up over the first one --- the torus $\Theta \in \R^4$, constructured in [2] and [3]. On the other hand, in [4] and [5] we proposed a…

Symplectic Geometry · Mathematics 2015-05-18 Nikolay A. Tyurin

Causal learning from data has received much attention recently. Bayesian networks can be used to capture causal relationships. There, one recovers a weighted directed acyclic graph in which random variables are represented by vertices, and…

Machine Learning · Computer Science 2026-01-06 Pavel Rytir , Ales Wodecki , Georgios Korpas , Jakub Marecek

Bayesian networks are probabilistic graphical models widely employed to understand dependencies in high dimensional data, and even to facilitate causal discovery. Learning the underlying network structure, which is encoded as a directed…

Machine Learning · Statistics 2022-02-03 Jack Kuipers , Polina Suter , Giusi Moffa

Non-Bayesian social learning theory provides a framework for distributed inference of a group of agents interacting over a social network by sequentially communicating and updating beliefs about the unknown state of the world through…

Methodology · Statistics 2019-10-25 James Z. Hare , Cesar Uribe , Lance Kaplan , Ali Jadbabaie

The connected graph of degree sequence 3,3,3,1,1,1 is called a net, and the vertices of degree 1 in a net is called its endvertices. Broersma conjectured in 1993 that a 2-connected graph G with no induced K_{1,3} is hamiltonian if every…

Combinatorics · Mathematics 2018-03-28 Shuya Chiba , Jun Fujisawa

Language theory, symbolic dynamics, modelisation of viral insertion into the genetic code of a host cell motivate the introduction of new types of bialgebras whose coalgebra parts are not necessarily coassociative. One of the aim of this…

Quantum Algebra · Mathematics 2007-05-23 Leroux Philippe

We study a notion of tropical linear series on metric graphs that combines two essential properties of tropicalizations of linear series on algebraic curves: the Baker-Norine rank and the independence rank. Our main results relate the local…

Algebraic Geometry · Mathematics 2025-09-05 Chih-Wei Chang , Matthew Dupraz , Hernan Iriarte , David Jensen , Dagan Karp , Sam Payne , Jidong Wang

Subtle alterations in brain network topology often evade detection by traditional statistical methods. To address this limitation, we introduce a Bayesian inference framework for topological comparison of brain networks that…

Methodology · Statistics 2025-11-06 Xukun Zhu , Michael W Lutz , Tananun Songdechakraiwut

We prove that a d-web near a point in n-space, where n is greater than 2 and d is greater than 2n-1, is equivalent to an algebraic web, if it has maximal rank or, more generally, if it has (2d - 3n + 1) abelian relations the 1-jets of which…

Differential Geometry · Mathematics 2007-05-23 Jean-Marie Trépreau

This paper introduces a novel approach to understanding Galois theory, one of the foundational areas of algebra, through the lens of machine learning. By analyzing polynomial equations with machine learning techniques, we aim to streamline…

Machine Learning · Computer Science 2025-01-23 Elira Shaska , Tony Shaska

Unlike the classical linear model, nonlinear generative models have been addressed sparsely in the literature of statistical learning. This work aims to bringing attention to these models and their secrecy potential. To this end, we invoke…

Information Theory · Computer Science 2022-07-15 Ali Bereyhi , Bruno Loureiro , Florent Krzakala , Ralf R. Müller , Hermann Schulz-Baldes

The correspondence between unmixed bipartite graphs and sublattices of the oolean lattice is discussed. By using this correspondence, we show the existence of squarefree quadratic initial ideals of toric ideals arising from minimal vertex…

Commutative Algebra · Mathematics 2019-01-11 Juergen Herzog , Takayuki Hibi , Hidefumi Ohsugi

Bayesian networks (BN) are directed acyclic graphical (DAG) models that have been adopted into many fields for their strengths in transparency, interpretability, probabilistic reasoning, and causal modeling. Given a set of data, one hurdle…

Artificial Intelligence · Computer Science 2023-05-19 Christian D. Blakely
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