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Topological data analysis uses tools from topology -- the mathematical area that studies shapes -- to create representations of data. In particular, in persistent homology, one studies one-parameter families of spaces associated with data,…

Machine Learning · Computer Science 2020-12-01 Guido Montúfar , Nina Otter , Yuguang Wang

Directed graphs arise in many applications where computing persistent homology helps to encode the shape and structure of the input information. However, there are only a few ways to turn the directed graph information into an undirected…

Computational Geometry · Computer Science 2026-04-30 David E. Muñoz , Elizabeth Munch , Firas A. Khasawneh

Real data is often given as a point cloud, i.e. a finite set of points with pairwise distances between them. An important problem is to detect the topological shape of data --- for example, to approximate a point cloud by a low-dimensional…

Algebraic Topology · Mathematics 2018-10-09 Sara Kalisnik Verovsek , Vitaliy Kurlin , Davorin Lesnik

We develop an analysis pipeline for characterizing the topology of large scale structure and extracting cosmological constraints based on persistent homology. Persistent homology is a technique from topological data analysis that quantifies…

Cosmology and Nongalactic Astrophysics · Physics 2021-06-14 Matteo Biagetti , Alex Cole , Gary Shiu

Reconstructing models from unorganized point clouds presents a significant challenge, especially when the models consist of multiple components represented by their surface point clouds. Such models often involve point clouds with noise…

Computational Geometry · Computer Science 2025-08-26 Yu Chen , Hongwei Lin

Harmonic centrality calculates the importance of a node in a network by adding the inverse of the geodesic distances of this node to all the other nodes. Harmonic centralization, on the other hand, is the graph-level centrality score based…

Combinatorics · Mathematics 2022-05-10 Jose Mari E. Ortega , Rolito G. Eballe

One way of characterizing the topological and structural properties of vertices and edges in a graph is by using structural similarity measures. Measures like Cosine, Jaccard and Dice compute the similarities restricted to the immediate…

Social and Information Networks · Computer Science 2018-05-04 Eduar Castrillo , Elizabeth León , Jonatan Gómez

Traditional graph centrality measures effectively quantify node importance but fail to capture the structural uniqueness of multi-scale connectivity patterns -- critical for understanding network resilience and function. This paper…

Social and Information Networks · Computer Science 2025-11-03 R. Scott Johnson

Persistent homology is a method for computing the topological features present in a given data. Recently, there has been much interest in the integration of persistent homology as a computational step in neural networks or deep learning. In…

Machine Learning · Computer Science 2020-11-17 Padraig Corcoran , Bailin Deng

A fundamental tool in topological data analysis is persistent homology, which allows extraction of information from complex datasets in a robust way. Persistent homology assigns a module over a principal ideal domain to a one-parameter…

Algebraic Topology · Mathematics 2019-06-19 Heather A. Harrington , Nina Otter , Hal Schenck , Ulrike Tillmann

This article aims to study the topological invariant properties encoded in node graph representational embeddings by utilizing tools available in persistent homology. Specifically, given a node embedding representation algorithm, we…

Machine Learning · Computer Science 2021-10-12 Mustafa Hajij , Ghada Zamzmi , Xuanting Cai

Differently from theoretical scale-free networks, most of real networks present multi-scale behavior with nodes structured in different types of functional groups and communities. While the majority of approaches for classification of nodes…

Physics and Society · Physics 2012-03-22 Filipi Nascimento Silva , Marilza A. Rodrigues , Luciano da Fontoura Costa

We present a novel graph embedding space (i.e., a set of measures on graphs) for performing statistical analyses of networks. Key improvements over existing approaches include discovery of "motif-hubs" (multiple overlapping significant…

Disordered Systems and Neural Networks · Physics 2007-05-23 Etay Ziv , Robin Koytcheff , Manuel Middendorf , Chris Wiggins

In persistent homology analysis, interval modules play a central role in describing the birth and death of topological features across a filtration. In this work, we extend this setting, and propose the use of bipath persistent homology,…

Algebraic Topology · Mathematics 2024-04-04 Toshitaka Aoki , Emerson G. Escolar , Shunsuke Tada

Centrality is an important notion in complex networks; it could be used to characterize how influential a node or an edge is in the network. It plays an important role in several other network analysis tools including community detection.…

Social and Information Networks · Computer Science 2017-03-23 Sambaran Bandyopadhyay , M. Narasimha Murty , Ramasuri Narayanam

In the study of dynamical systems on networks/graphs, a key theme is how the network topology influences stability for steady states or synchronized states. Ideally, one would like to derive conditions for stability or instability that…

Dynamical Systems · Mathematics 2020-07-01 Raffaella Mulas , Christian Kuehn , Jürgen Jost

Unveil the homophilic/heterophilic behaviors that characterize the wiring patterns of complex networks is an important task in social network analysis, often approached studying the assortative mixing of node attributes. Recent works…

Social and Information Networks · Computer Science 2020-12-10 Giulio Rossetti , Salvatore Citraro , Letizia Milli

The topological patterns exhibited by many real-world networks motivate the development of topology-based methods for assessing the similarity of networks. However, extracting topological structure is difficult, especially for large and…

Machine Learning · Computer Science 2022-03-15 Tananun Songdechakraiwut , Bryan M. Krause , Matthew I. Banks , Kirill V. Nourski , Barry D. Van Veen

This paper introduces persistent homology, which is a powerful tool to characterize the shape of data using the mathematical concept of topology. We explain the fundamental idea of persistent homology from scratch using some examples. We…

Algebraic Topology · Mathematics 2022-05-25 Ippei Obayashi , Takenobu Nakamura , Yasuaki Hiraoka

Surface roughness plays an important role in analyzing engineering surfaces. It quantifies the surface topography and can be used to determine whether the resulting surface finish is acceptable or not. Nevertheless, while several existing…

Signal Processing · Electrical Eng. & Systems 2021-10-20 Melih C. Yesilli , Firas A. Khasawneh
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