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In this work, we study linear error-correcting codes against adversarial insertion-deletion (insdel) errors, a topic that has recently gained a lot of attention. We construct linear codes over $\mathbb{F}_q$, for…

Information Theory · Computer Science 2022-01-19 Roni Con , Amir Shpilka , Itzhak Tamo

The $k$-dimensional coding schemes refer to a collection of methods that attempt to represent data using a set of representative $k$-dimensional vectors, and include non-negative matrix factorization, dictionary learning, sparse coding,…

Machine Learning · Statistics 2016-04-26 Tongliang Liu , Dacheng Tao , Dong Xu

Synthetic DNA can in principle be used for the archival storage of arbitrary data. Because errors are introduced during DNA synthesis, storage, and sequencing, an error-correcting code (ECC) is necessary for error-free recovery of the data.…

Quantitative Methods · Quantitative Biology 2018-12-05 William H. Press , John A. Hawkins

Linear codes over finite extension fields have widespread applications in theory and practice. In some scenarios, the decoder has a sequential access to the codeword symbols, giving rise to a hierarchical erasure structure. In this paper we…

Information Theory · Computer Science 2019-10-23 Netanel Raviv , Moshe Schwartz , Rami Cohen , Yuval Cassuto

Let $\mathcal{B}(\cdot)$ be an error ball function. A set of $q$-ary sequences of length $n$ is referred to as an \emph{$(n,q,N;\mathcal{B})$-reconstruction code} if each sequence $\boldsymbol{x}$ within this set can be uniquely…

Information Theory · Computer Science 2025-08-21 Yubo Sun , Gennian Ge

Datasets often contain values that naturally reside in a metric space: numbers, strings, geographical locations, machine-learned embeddings in a Euclidean space, and so on. We study the computational complexity of repairing inconsistent…

Databases · Computer Science 2024-09-26 Youri Kaminsky , Benny Kimelfeld , Ester Livshits , Felix Naumann , David Wajc

Motivated by DNA-based data storage, we investigate a system where digital information is stored in an unordered set of several vectors over a finite alphabet. Each vector begins with a unique index that represents its position in the whole…

Information Theory · Computer Science 2019-01-23 Andreas Lenz , Paul H. Siegel , Antonia Wachter-Zeh , Eitan Yaakobi

The coverage depth problem in DNA data storage is about computing the expected number of reads needed to recover all encoded strands. Given a generator matrix of a linear code, this quantity equals the expected number of randomly drawn…

Information Theory · Computer Science 2026-03-09 Matteo Bertuzzo , Alberto Ravagnani , Eitan Yaakobi

Distributed storage systems often introduce redundancy to increase reliability. When coding is used, the repair problem arises: if a node storing encoded information fails, in order to maintain the same level of reliability we need to…

Information Theory · Computer Science 2010-04-27 Alexandros G. Dimakis , Kannan Ramchandran , Yunnan Wu , Changho Suh

Generalized Concatenated (GC), also known as Integrated Interleaved (II) Codes, are studied from an erasure correction point of view making them useful for Redundant Arrays of Independent Disks (RAID) types of architectures combining global…

Information Theory · Computer Science 2014-07-11 Mario Blaum , Steven Hetzler

Three-dimensional (3D) printing's accessibility enables rapid manufacturing but also poses security risks, such as the unauthorized production of untraceable firearms and prohibited items. To ensure traceability and accountability,…

Information Theory · Computer Science 2025-08-07 Junsheng Liu , Netanel Raviv

We introduce synchronization strings as a novel way of efficiently dealing with synchronization errors, i.e., insertions and deletions. Synchronization errors are strictly more general and much harder to deal with than commonly considered…

Information Theory · Computer Science 2017-04-05 Bernhard Haeupler , Amirbehshad Shahrasbi

The problem of error correction in both coherent and noncoherent network coding is considered under an adversarial model. For coherent network coding, where knowledge of the network topology and network code is assumed at the source and…

Information Theory · Computer Science 2019-05-07 Danilo Silva , Frank R. Kschischang

In [1], the authors proposed a new model of DNA storage system that integrates all three steps of retrieval and introduced the concept of DNA-correcting codes, which guarantees that the output of the storage system can be decoded to the…

Information Theory · Computer Science 2023-11-17 Huawei Wu

This paper constructs a non-binary code correcting a single $b$-burst of insertions or deletions with a large cardinality. This paper also proposes a decoding algorithm of this code and evaluates a lower bound of the cardinality of this…

Information Theory · Computer Science 2018-08-10 Toyohiko Saeki , Takayuki Nozaki

Consider a binary word being transmitted through a communication channel that introduces deletable errors where each bit of the word is either retained, flipped, erased or deleted. The simplest code for correcting \emph{all} possible…

Information Theory · Computer Science 2018-05-03 Ghurumuruhan Ganesan

Locally Decodable Codes (LDCs) are error-correcting codes for which individual message symbols can be quickly recovered despite errors in the codeword. LDCs for Hamming errors have been studied extensively in the past few decades, where a…

Information Theory · Computer Science 2025-12-30 Jeremiah Blocki , Kuan Cheng , Elena Grigorescu , Xin Li , Yu Zheng , Minshen Zhu

We consider the problem of constructing codes that can correct deletions that are localized within a certain part of the codeword that is unknown a priori. Namely, the model that we study is when at most $k$ deletions occur in a window of…

Information Theory · Computer Science 2021-05-07 Rawad Bitar , Serge Kas Hanna , Nikita Polyanskii , Ilya Vorobyev

The joint optimization of the reconstruction and classification error is a hard non convex problem, especially when a non linear mapping is utilized. In order to overcome this obstacle, a novel optimization strategy is proposed, in which a…

Machine Learning · Computer Science 2022-11-07 Ioannis A. Nellas , Sotiris K. Tasoulis , Vassilis P. Plagianakos , Spiros V. Georgakopoulos

We consider the problem of numerically integrating functions with hyperplane discontinuities over the entire Euclidean space in many dimensions. We describe a simple process through which the Euclidean space is partitioned into simplices on…

Numerical Analysis · Mathematics 2014-06-06 Vassilis Pandis
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