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One of the main challenges in developing racetrack memory systems is the limited precision in controlling the track shifts, that in turn affects the reliability of reading and writing the data. A current proposal for combating deletions in…

Information Theory · Computer Science 2022-07-19 Jin Sima , Jehoshua Bruck

We first give a construction of binary $t_1$-deletion-$t_2$-insertion-burst correcting codes with redundancy at most $\log(n)+(t_1-t_2-1)\log\log(n)+O(1)$, where $t_1\ge 2t_2$. Then we give an improved construction of binary codes capable…

Information Theory · Computer Science 2022-11-23 Zuo Ye , Ohad Elishco

DNA-based storage is an emerging storage technology that provides high information density and long duration. Due to the physical constraints in the reading and writing processes, error correction in DNA storage poses several interesting…

Information Theory · Computer Science 2023-10-04 Jin Sima , Netanel Raviv , Moshe Schwartz , Jehoshua Bruck

The deletion channel is known to be a notoriously diffcult channel to design error-correction codes for. In spite of this difficulty, there are some beautiful code constructions which give some intuition about the channel and about what…

Data Structures and Algorithms · Computer Science 2019-06-20 Kedar Tatwawadi , Shubham Chandak

In this paper, we prove the equivalence of inserting separable quantum states and deletions. Hence any quantum code that corrects deletions automatically corrects separable insertions. First, we describe the quantum insertion/deletion error…

Quantum Physics · Physics 2021-12-17 Taro Shibayama , Yingkai Ouyang

Erasure coding techniques are getting integrated in networked distributed storage systems as a way to provide fault-tolerance at the cost of less storage overhead than traditional replication. Redundancy is maintained over time through…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-06-12 Lluis Pamies-Juarez , Frédérique Oggier , Anwitaman Datta

An $n$-dimensional chair consists of an $n$-dimensional box from which a smaller $n$-dimensional box is removed. A tiling of an $n$-dimensional chair has two nice applications in coding for write-once memories. The first one is in the…

Information Theory · Computer Science 2015-03-20 Sarit Buzaglo , Tuvi Etzion

The ability to store data in the DNA of a living organism has applications in a variety of areas including synthetic biology and watermarking of patented genetically-modified organisms. Data stored in this medium is subject to errors…

Information Theory · Computer Science 2016-11-17 Siddharth Jain , Farzad Farnoud , Moshe Schwartz , Jehoshua Bruck

Insertion and deletion (insdel for short) errors are synchronization errors in communication systems caused by the loss of positional information in the message. Reed-Solomon codes have gained a lot of interest due to its encoding…

Information Theory · Computer Science 2019-12-06 Tai Do Duc , Shu Liu , Ivan Tjuawinata , Chaoping Xing

In this work, we consider the problem of efficient decoding of codes from insertions and deletions. Most of the known efficient codes are codes with synchronization strings which allow one to reduce the problem of decoding insertions and…

Information Theory · Computer Science 2025-05-06 Anisha Banerjee , Roni Con , Antonia Wachter-Zeh , Eitan Yaakobi

Recent efforts in coding theory have focused on building codes for insertions and deletions, called insdel codes, with optimal trade-offs between their redundancy and their error-correction capabilities, as well as efficient encoding and…

Information Theory · Computer Science 2020-12-08 Alexander R. Block , Jeremiah Blocki , Elena Grigorescu , Shubhang Kulkarni , Minshen Zhu

A covering code is a set of codewords with the property that the union of balls, suitably defined, around these codewords covers an entire space. Generally, the goal is to find the covering code with the minimum size codebook. While most…

Information Theory · Computer Science 2020-05-26 Andreas Lenz , Cyrus Rashtchian , Paul H. Siegel , Eitan Yaakobi

This paper studies codes that correct bursts of deletions. Namely, a code will be called a $b$-burst-deletion-correcting code if it can correct a deletion of any $b$ consecutive bits. While the lower bound on the redundancy of such codes…

Information Theory · Computer Science 2016-05-16 Clayton Schoeny , Antonia Wachter-Zeh , Ryan Gabrys , Eitan Yaakobi

Motivated by applications in DNA-based storage, we introduce the new problem of code design in the Damerau metric. The Damerau metric is a generalization of the Levenshtein distance which, in addition to deletions, insertions and…

Information Theory · Computer Science 2018-05-02 Ryan Gabrys , Eitan Yaakobi , Olgica Milenkovic

The increasing demand for data storage has prompted the exploration of new techniques, with molecular data storage being a promising alternative. In this work, we develop coding schemes for a new storage paradigm that can be represented as…

Information Theory · Computer Science 2025-10-30 Boaz Moav , Ryan Gabrys , Eitan Yaakobi

We consider the problem of constructing codes that can correct $\delta$ deletions occurring in an arbitrary binary string of length $n$ bits. Varshamov-Tenengolts (VT) codes, dating back to 1965, are zero-error single deletion $(\delta=1)$…

Information Theory · Computer Science 2018-05-25 Serge Kas Hanna , Salim El Rouayheb

This paper introduces a new solution to DNA storage that integrates all three steps of retrieval, namely clustering, reconstruction, and error correction. DNA-correcting codes are presented as a unique solution to the problem of ensuring…

Information Theory · Computer Science 2024-07-02 Avital Boruchovsky , Daniella Bar-Lev , Eitan Yaakobi

Labeling of DNA molecules is a fundamental technique for DNA visualization and analysis. This process was mathematically modeled in [1], where the received sequence indicates the positions of the used labels. In this work, we develop error…

Information Theory · Computer Science 2025-11-04 Dganit Hanania , Eitan Yaakobi

Coding in the projective space has received recently a lot of attention due to its application in network coding. Reduced row echelon form of the linear subspaces and Ferrers diagram can play a key role for solving coding problems in the…

Information Theory · Computer Science 2009-03-14 Tuvi Etzion , Natalia Silberstein

The problem of correcting deletions and insertions has recently received significantly increased attention due to the DNA-based data storage technology, which suffers from deletions and insertions with extremely high probability. In this…

Information Theory · Computer Science 2023-11-09 Tuan Thanh Nguyen , Kui Cai , Paul H. Siegel