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A useful approach to the mathematical analysis of large-scale biological networks is based upon their decompositions into monotone dynamical systems. This paper deals with two computational problems associated to finding decompositions…

Molecular Networks · Quantitative Biology 2007-05-23 Bhaskar DasGupta , German Andres Enciso , Eduardo Sontag , Yi Zhang

This paper develops a unified analytical framework for determinant identities under finite-rank perturbations of square matrices that remains valid without invertibility assumptions. In contrast to classical inverse-based formulations, the…

Optimization and Control · Mathematics 2026-04-07 Robert Vrabel

The characterization of the "most connected" nodes in static or slowly evolving complex networks has helped in understanding and predicting the behavior of social, biological, and technological networked systems, including their robustness…

Physics and Society · Physics 2010-10-21 Scott A. Hill , Dan Braha

Multi-valued logical models can be used to describe biological networks on a high level of abstraction based on the network structure and logical parameters capturing regulatory effects. Interestingly, the dynamics of two distinct models…

Dynamical Systems · Mathematics 2016-01-28 Adam Streck , Therese Lorenz , Heike Siebert

Low-rank modeling generally refers to a class of methods that solve problems by representing variables of interest as low-rank matrices. It has achieved great success in various fields including computer vision, data mining, signal…

Computer Vision and Pattern Recognition · Computer Science 2014-10-24 Xiaowei Zhou , Can Yang , Hongyu Zhao , Weichuan Yu

The aim of this note (as well as of the course itself) is to give a largely self-contained proof of two of the main results in the field of low-rank matrix recovery. This field aims for identification of low-rank matrices from only limited…

Functional Analysis · Mathematics 2016-09-27 Jan Vybiral

A deluge of new data on social, technological and biological networked systems suggests that a large number of interactions among system units are not limited to pairs, but rather involve a higher number of nodes. To properly encode such…

Physics and Society · Physics 2023-11-08 Quintino Francesco Lotito , Federico Musciotto , Alberto Montresor , Federico Battiston

To comprehend the hierarchical organization of large integrated systems, we introduce the hierarchical map equation, which reveals multilevel structures in networks. In this information-theoretic approach, we exploit the duality between…

Physics and Society · Physics 2011-04-12 M. Rosvall , C. T. Bergstrom

The inference of rankings plays a central role in the theory of social choice, which seeks to establish preferences from collectively generated data, such as pairwise comparisons. Examples include political elections, ranking athletes based…

Social and Information Networks · Computer Science 2025-03-25 Juan Ignacio Perotti

Complex networks represent the natural backbone to study epidemic processes in populations of interacting individuals. Such a modeling framework, however, is naturally limited to pairwise interactions, making it less suitable to properly…

Physics and Society · Physics 2021-10-04 Sandeep Chowdhary , Aanjaneya Kumar , Giulia Cencetti , Iacopo Iacopini , Federico Battiston

Low-rank approximation is a fundamental technique in modern data analysis, widely utilized across various fields such as signal processing, machine learning, and natural language processing. Despite its ubiquity, the mechanics of low-rank…

Machine Learning · Computer Science 2024-08-13 Jun Lu

Representing social systems as networks, starting from the interactions between individuals, sheds light on the mechanisms governing their dynamics. However, networks encode only pairwise interactions, while most social interactions occur…

Physics and Society · Physics 2024-08-29 Iacopo Iacopini , Márton Karsai , Alain Barrat

Understanding the structural complexity and predictability of complex networks is a central challenge in network science. Although recent studies have revealed a relationship between compression-based entropy and link prediction…

Social and Information Networks · Computer Science 2025-10-14 Sebastián Brzovic , Cristóbal Rojas , Andrés Abeliuk

We present a unified theoretical framework connecting the first property of Deep Neural Collapse (DNC1) to the emergence of implicit low-rank bias in nonlinear networks trained with $L^2$ weight decay regularization. Our main contributions…

Machine Learning · Computer Science 2026-02-12 Emanuele Zangrando , Piero Deidda , Simone Brugiapaglia , Nicola Guglielmi , Francesco Tudisco

Spatio-temporal network dynamics is an emergent property of many complex systems which remains poorly understood. We suggest a new approach to its study based on the analysis of dynamical motifs -- small subnetworks with periodic and…

Disordered Systems and Neural Networks · Physics 2007-05-23 Valentin P. Zhigulin

Systematic relations between multiple objects that occur in various fields can be represented as networks. Real-world networks typically exhibit complex topologies whose structural properties are key factors in characterizing and further…

Physics and Society · Physics 2021-04-09 Yoshihisa Tanaka , Ryosuke Kojima , Shoichi Ishida , Fumiyoshi Yamashita , Yasushi Okuno

Information flow provides a natural measure for the causal interaction between dynamical events. This study extends our previous rigorous formalism of componentwise information flow to the bulk information flow between two complex…

Neurons and Cognition · Quantitative Biology 2021-12-30 X. San Liang

Recently there has been an increasing interest in studying dynamical processes on networks exhibiting higher-order structures, such as simplicial complexes, where the dynamics acts above and beyond dyadic interactions. Using simulations or…

Physics and Society · Physics 2023-09-25 István Z. Kiss , Iacopo Iacopini , Péter L. Simon , Nicos Georgiou

Complex network theory aims to model and analyze complex systems that consist of multiple and interdependent components. Among all studies on complex networks, topological structure analysis is of the most fundamental importance, as it…

Social and Information Networks · Computer Science 2010-09-15 Bo Yang , Jiming Liu

This work attempts to interpret modern deep (convolutional) networks from the principles of rate reduction and (shift) invariant classification. We show that the basic iterative gradient ascent scheme for optimizing the rate reduction of…

Machine Learning · Computer Science 2020-10-30 Kwan Ho Ryan Chan , Yaodong Yu , Chong You , Haozhi Qi , John Wright , Yi Ma