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Geometric, topological and graph theory modeling and analysis of biomolecules are of essential importance in the conceptualization of molecular structure, function, dynamics, and transport. On the one hand, geometric modeling provides…

Biomolecules · Quantitative Biology 2016-12-07 Kelin Xia , Guo-Wei Wei

We apply model theoretic methods to the problem of existence of countable universal graphs with finitely many forbidden connected subgraphs. We show that to a large extent the question reduces to one of local finiteness of an…

Logic · Mathematics 2016-09-07 Gregory Cherlin , Saharon Shelah , Niandong Shi

In some scientific fields, a scaling is able to modify the topology of an observed object. Our goal in the present work is to introduce a new formalism adapted to the mathematical representation of this kind of phenomenon. To this end, we…

Geometric Topology · Mathematics 2008-12-11 Guy Wallet

We study countable embedding-universal and homomorphism-universal structures and unify results related to both of these notions. We show that many universal and ultrahomogeneous structures allow a concise description (called here a finite…

Combinatorics · Mathematics 2010-09-06 Jan Hubicka

Generating random and pseudorandom numbers with a deterministic system is a long-standing challenge in theoretical research and engineering applications. Several pseudorandom number generators based on the inversive congruential method have…

Discrete Mathematics · Computer Science 2024-01-17 Xiaoxiong Lu , Chengqing Li , Bo Zhou

We confirm recently proposed theorems for the structure of next-to-soft corrections in gauge and gravity theories using diagrammatic techniques, first developed for use in QCD phenomenology. Our aim is to provide a useful alternative…

High Energy Physics - Theory · Physics 2015-06-22 C. D. White

Geometrical structures intrinsic to non-expanding, weakly isolated and isolated horizons are analyzed and compared with structures which arise in other contexts within general relativity, e.g., at null infinity. In particular, we address in…

General Relativity and Quantum Cosmology · Physics 2011-07-19 Abhay Ashtekar , Christopher Beetle , Jerzy Lewandowski

In this note, we study non-transitive graphs and prove a number of results when they satisfy a coarse version of transitivity. Also, for each finitely generated group $G$, we produce continuum many pairwise non-quasi-isometric regular…

Group Theory · Mathematics 2022-07-20 Josiah Oh , Mark Pengitore

We organize a table of regular graphs with minimal diameters and minimal mean path lengths, large bisection widths and high degrees of symmetries, obtained by enumerations on supercomputers. These optimal graphs, many of which are newly…

Discrete Mathematics · Computer Science 2019-12-30 Yidan Zhang , Xiaolong Huang , Zhipeng Xu , Yuefan Deng

Random shapes arise naturally in many contexts. The topological and geometric structure of such objects is interesting for its own sake, and also for applications. In physics, for example, such objects arise naturally in quantum gravity, in…

Combinatorics · Mathematics 2016-07-26 Matthew Kahle

In this paper, we develop the groundwork for a graph theoretic toy model of supersymmetric quantum mechanics. Using discrete Witten-Morse theory, we demonstrate that finite graphs have a natural supersymmetric structure and use this…

Mathematical Physics · Physics 2025-07-15 Bek Herz , Ivan Contreras

In this paper we develop a geometric approach to convex subdifferential calculus in finite dimensions with employing some ideas of modern variational analysis. This approach allows us to obtain natural and rather easy proofs of basic…

Optimization and Control · Mathematics 2015-10-06 Boris Mordukhovich , Nguyen Mau Nam

We analyse graphs in which each vertex is assigned random coordinates in a geometric space of arbitrary dimensionality and only edges between adjacent points are present. The critical connectivity is found numerically by examining the size…

Statistical Mechanics · Physics 2009-11-07 Jesper Dall , Michael Christensen

In this paper, we consider the problem of counting and sampling structures in graphs. We define a class of "edge universal labeling problems"---which include proper $k$-colorings, independent sets, and downsets---and describe simple…

Data Structures and Algorithms · Computer Science 2020-08-20 Christine T. Cheng , Will Rosenbaum

This is an overview of higher structural constructions in physics. The main motivations of our current attempt are as follows: (i) to provide a brief introduction to derived algebraic geometry, (ii) to understand how derived objects…

Algebraic Geometry · Mathematics 2023-07-14 Kadri İlker Berktav

Associated to any graph is a toric ideal whose generators record relations among the cuts of the graph. We study these ideals and the geometry of the corresponding toric varieties. Our theorems and conjectures relate the combinatorial…

Commutative Algebra · Mathematics 2007-05-23 Bernd Sturmfels , Seth Sullivant

In this paper we survey several intersection and non-intersection phenomena appearing in the realm of symplectic topology. We discuss their implications and finally outline some new relations of the subject to algebraic geometry.

Symplectic Geometry · Mathematics 2007-05-23 Paul Biran

We investigate geometric properties of homogeneous parabolic geometries with generalized symmetries. We show that they can be reduced to a simpler geometric structures and interpret them explicitly. For specific types of parabolic…

Differential Geometry · Mathematics 2016-08-10 Jan Gregorovič , Lenka Zalabová

Recently there has been increased interest in fitting generative graph models to real-world networks. In particular, Bl\"asius et al. have proposed a framework for systematic evaluation of the expressivity of random graph models. We extend…

Social and Information Networks · Computer Science 2024-05-14 Benjamin Dayan , Marc Kaufmann , Ulysse Schaller

We investigate the influence of diffraction on the statistics of energy levels in quantum systems with a chaotic classical limit. By applying the geometrical theory of diffraction we show that diffraction on singularities of the potential…

chao-dyn · Physics 2010-03-09 Martin Sieber