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Finding an Approximate Longest Common Substring (ALCS) within a given set $S=\{s_1,s_2,\ldots,s_m\}$ of $m \ge 2$ strings is a key problem in computational biology, such as identifying related mutations across multiple genetic sequences. We…

Data Structures and Algorithms · Computer Science 2025-09-22 Hamed Hasibi , Neerja Mhaskar , W. F. Smyth

This paper presents the following results on sets that are complete for NP. 1. If there is a problem in NP that requires exponential time at almost all lengths, then every many-one NP-complete set is complete under length-increasing…

Computational Complexity · Computer Science 2010-02-03 Xiaoyang Gu , John M. Hitchcock , A. Pavan

Let $k$ and $\ell$ be positive integers. A cycle with two blocks $c(k,\ell)$ is an oriented cycle which consists of two internally (vertex) disjoint directed paths of lengths at least $k$ and $\ell$, respectively, from a vertex to another…

Combinatorics · Mathematics 2016-10-20 Ringi Kim , Seog-Jin Kim , Jie Ma , Boram Park

In the decades-old Pattern Matching with Edits problem, given a length-$n$ string $T$ (the text), a length-$m$ string $P$ (the pattern), and a positive integer $k$ (the threshold), the task is to list the $k$-error occurrences of $P$ in…

Data Structures and Algorithms · Computer Science 2026-04-20 Tomasz Kociumaka , Jakob Nogler , Philip Wellnitz

A $k$-configuration is a collection of $k$ distinct integers $x_1,\ldots,x_k$ together with their pairwise arithmetic means $\frac{x_i+x_j}{2}$ for $1 \leq i < j \leq k$. Building on recent work of Filmus, Hatami, Hosseini and Kelman on…

Number Theory · Mathematics 2025-01-20 Adrian Beker

For a fixed graph $H$, what is the smallest number of colours $C$ such that there is a proper edge-colouring of the complete graph $K_n$ with $C$ colours containing no two vertex-disjoint colour-isomorphic copies, or repeats, of $H$? We…

Combinatorics · Mathematics 2021-06-28 David Conlon , Mykhaylo Tyomkyn

We consider the problem of computing a shortest solid cover of an indeterminate string. An indeterminate string may contain non-solid symbols, each of which specifies a subset of the alphabet that could be present at the corresponding…

Data Structures and Algorithms · Computer Science 2014-12-12 Maxime Crochemore , Costas S. Iliopoulos , Tomasz Kociumaka , Jakub Radoszewski , Wojciech Rytter , Tomasz Waleń

Twenty years ago Bondy and Vince conjectured that for any nonnegative integer $k$, except finitely many counterexamples, every graph with $k$ vertices of degree less than three contains two cycles whose lengths differ by one or two. The…

Combinatorics · Mathematics 2019-07-25 Jun Gao , Jie Ma

A family of subsets of $\{1,\ldots,n\}$ is called {\it intersecting} if any two of its sets intersect. A classical result in extremal combinatorics due to Erd\H{o}s, Ko, and Rado determines the maximum size of an intersecting family of…

Combinatorics · Mathematics 2017-11-30 Peter Frankl , Andrey Kupavskii

In the $k$-mismatch problem, given a pattern and a text of length $n$ and $m$ respectively, we have to find if the text has a sub-string with a Hamming distance of at most $k$ from the pattern. This has been studied in the classical setting…

Quantum Physics · Physics 2026-01-13 Ruhan Habib , Shadman Shahriar

In the BCSS model of real number computations we prove a concrete and explicit semi-decidable language to be undecidable yet not reducible from (and thus strictly easier than) the real Halting Language. This solution to Post's Problem over…

Logic in Computer Science · Computer Science 2007-05-23 Klaus Meer , Martin Ziegler

A subsequence of a word $w$ is a word $u$ such that $u = w[i_1] w[i_2] , \dots w[i_{|u|}]$, for some set of indices $1 \leq i_1 < i_2 < \dots < i_k \leq |w|$. A word $w$ is $k$-subsequence universal over an alphabet $\Sigma$ if every word…

Data Structures and Algorithms · Computer Science 2023-04-11 Duncan Adamson

The Collision problem is to decide whether a given list of numbers $(x_1,\ldots,x_n)\in[n]^n$ is $1$-to-$1$ or $2$-to-$1$ when promised one of them is the case. We show an $n^{\Omega(1)}$ randomised communication lower bound for the natural…

Computational Complexity · Computer Science 2022-08-11 Mika Göös , Siddhartha Jain

The picture-hanging puzzle, popularized by Demaine et al. (2014), asks for a way to wrap a wire around $n$ nails such that the picture hangs as long as fewer than $k$ nails are removed, but falls as soon as any $k$ are removed. Solutions…

Combinatorics · Mathematics 2026-05-28 Tom Verhoeff

Given a finite directed graph, a coloring of its edges turns the graph into a finite-state automaton. A k-synchronizing word of a deterministic automaton is a word in the alphabet of colors at its edges that maps the state set of the…

Formal Languages and Automata Theory · Computer Science 2022-06-16 A. N. Trahtman

There are n travellers who have k bicycles and they wish to complete a journey in the shortest possible time. We investigate optimal solutions of this problem, showing they are characterized by a set of words in the Dyck language.…

Combinatorics · Mathematics 2022-09-07 Peter M. Higgins

Let $\mathbb{N}$ be the set of all nonnegative integers. For $S\subseteq \mathbb{N}$ and $n\in \mathbb{N}$, let $R_S(n)$ denote the number of solutions of the equation $n=s+s'$, $s, s'\in S$, $s<s'$. In this paper, we determine the…

Number Theory · Mathematics 2023-12-29 Shi-Qiang Chen , Csaba Sándor , Quan-Hui Yang

We consider the problem of finding, given two documents of total length $n$, a longest string occurring as a substring of both documents. This problem, known as the Longest Common Substring (LCS) problem, has a classic $O(n)$-time solution…

Data Structures and Algorithms · Computer Science 2020-04-29 Stav Ben-Nun , Shay Golan , Tomasz Kociumaka , Matan Kraus

A universal cycle, or u-cycle, for a given set of words is a circular word that contains each word from the set exactly once as a contiguous subword. The celebrated de Bruijn sequences are a particular case of such a u-cycle, where a set in…

Combinatorics · Mathematics 2019-08-06 Herman Z. Q. Chen , Sergey Kitaev , Brian Y. Sun

Let $\mathcal T (n, k)$ be the set of the $k$-uniform supertrees with $n$ vertices and $m$ edges, where $k\geq 3$, $n\geq 5$ and $m=\frac{n-1}{k-1}$. % Let $m$ be the number of the edges of the supertrees in $\mathcal T (n, k)$, where…

Combinatorics · Mathematics 2023-08-02 Lou-Jun Yu , Wen-Huan Wang