English
Related papers

Related papers: Generalized Glauber dynamics for inference in biol…

200 papers

We introduce a general framework for deriving effective dynamics from arbitrary time-dependent generators, based on a systematic operator cumulant expansion. Unlike traditional approaches, which typically assume periodic or adiabatic…

Mathematical Physics · Physics 2025-10-02 Leon Bello , Tal Rubin , Wentao Fan , Nathaniel Fisch , Hakan Türeci

In this paper we present a deep learning method to predict the temporal evolution of dissipative dynamic systems. We propose using both geometric and thermodynamic inductive biases to improve accuracy and generalization of the resulting…

Machine Learning · Computer Science 2022-06-07 Quercus Hernández , Alberto Badías , Francisco Chinesta , Elías Cueto

We investigate the Generalized Lotka-Volterra (GLV) equations, a central model in theoretical ecology, where species interactions are assumed to be fixed over time and heterogeneous (quenched noise). Recent studies have suggested that the…

Populations and Evolution · Quantitative Biology 2023-06-26 Sandro Azaele , Amos Maritan

We study continuous time Glauber dynamics for random configurations with local constraints (e.g. proper coloring, Ising and Potts models) on finite graphs with $n$ vertices and of bounded degree. We show that the relaxation time (defined as…

Probability · Mathematics 2016-09-07 Noam Berger , Claire Kenyon , Elchanan Mossel , Yuval Peres

The statistical mechanics of Gibbs is a juxtaposition of subjective, probabilistic ideas on the one hand and objective, mechanical ideas on the other. In this paper, we follow the path set out by Jaynes, including elements added…

Statistical Mechanics · Physics 2015-11-24 David M. Rogers , Thomas L. Beck , Susan B. Rempe

This study establishes a universal mechanism for entropy production in isolated quantum systems governed by interactions that induce random-phase fluctuations. By developing a resolvent-based framework, we demonstrate that steady-state…

Quantum Physics · Physics 2026-01-16 Zhiqiang Huang , Qing-yu Cai

Trap models are intuitively appealing and often solvable models of glassy dynamics. In particular, they have been used to study aging and the resulting out-of-equilibrium fluctuation-dissipation relations between correlations and response…

Disordered Systems and Neural Networks · Physics 2007-05-23 Peter Sollich

This paper provides an overview of the research on the metastable behavior of the Ising model. We analyze the transition times from the set of metastable states to the set of the stable states by identifying the critical configurations that…

Statistical Mechanics · Physics 2025-01-13 Vanessa Jacquier

We study the statistical distribution of the closest encounter between observations computed along different trajectories of a mixing dynamical system. At the limit of large trajectories, the distribution is of Gumbel type and depends on…

Dynamical Systems · Mathematics 2021-04-29 Théophile Caby

In this article, we have given a systematic formulation of the new generalized competing mechanism: the Glauber-type single-spin transition mechanism, with probability p, simulates the contact of the system with the heat bath, and the…

Disordered Systems and Neural Networks · Physics 2009-11-07 Han Zhu , Jian-yang Zhu , Yang Zhou

The generalized Gibbs ensemble (GGE) was introduced ten years ago to describe observables in isolated integrable quantum systems after equilibration. Since then, the GGE has been demonstrated to be a powerful tool to predict the outcome of…

Statistical Mechanics · Physics 2016-06-29 Lev Vidmar , Marcos Rigol

Given a graph $G$, the hard-core model defines a probability distribution over its independent sets, assigning to each set of size $k$ a probability of $\frac{\lambda^k}{Z}$, where $\lambda>0$ is a parameter known as the \emph{fugacity} and…

Data Structures and Algorithms · Computer Science 2025-11-24 Malory Marin

Practical Bayesian learning often requires (1) online inference, (2) dynamic models, and (3) ensembling over multiple different models. Recent advances have shown how to use random feature approximations to achieve scalable, online…

Machine Learning · Computer Science 2024-05-03 Daniel Waxman , Petar M. Djurić

Most real world phenomena such as sunlight distribution under a forest canopy, minerals concentration, stock valuation, exhibit nonstationary dynamics i.e. phenomenon variation changes depending on the locality. Nonstationary dynamics pose…

Machine Learning · Computer Science 2018-11-05 Sahil Garg

Motivated by applications in movement ecology, in this paper I propose a new class of integrated continuous-time hidden Markov models in which each observation depends on the underlying state of the process over the whole interval since the…

Methodology · Statistics 2019-10-01 Paul G Blackwell

Despite the successes of probabilistic models based on passing noise through neural networks, recent work has identified that such methods often fail to capture tail behavior accurately, unless the tails of the base distribution are…

Machine Learning · Statistics 2023-06-16 Feynman Liang , Liam Hodgkinson , Michael W. Mahoney

Ecological communities with many species can be classified into dynamical phases. In systems with all-to-all interactions, a phase where a fixed point is always reached and a dynamically-fluctuating phase have been found. The dynamics when…

Populations and Evolution · Quantitative Biology 2023-08-04 Stav Marcus , Ari M Turner , Guy Bunin

In a vast class of systems, which includes members as diverse as sedimenting particles and bird flocks, interactions do not stem from a potential, and are in general nonreciprocal. Thus, it is not possible to define a conventional energy…

Statistical Mechanics · Physics 2026-04-03 Yu-Bo Shi , Roderich Moessner , Ricard Alert , Marin Bukov

We formulate a dynamical fluctuation theory for stationary non equilibrium states (SNS) which is tested explicitly in stochastic models of interacting particles. In our theory a crucial role is played by the time reversed dynamics. Within…

Statistical Mechanics · Physics 2015-12-18 L. Bertini , A. De Sole , D. Gabrielli , G. Jona-Lasinio , C. Landim

In this paper we study metastable behaviour at low temperature of Glauber spin-flip dynamics on random graphs. We fix a large number of vertices and randomly allocate edges according to the Configuration Model with a prescribed degree…

Probability · Mathematics 2016-03-01 Sander Dommers , Frank den Hollander , Oliver Jovanovski , Francesca Nardi