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Gene regulatory network (GRN) plays a central role in system biology and genomics. It provides a promising way to model and study complex biological processes. Several computational methods have been developed for the construction and…

Molecular Networks · Quantitative Biology 2019-07-29 Yanying Wu

For a property $P$ and a sub-property $P'$, we say that $P$ is $P'$-partially testable with $q$ queries if there exists an algorithm that distinguishes, with high probability, inputs in $P'$ from inputs $\epsilon$-far from $P$ by using $q$…

Computational Complexity · Computer Science 2013-06-07 Eldar Fischer , Yonatan Goldhirsh , Oded Lachish

Petri nets are a mathematical language for modeling and reasoning about distributed systems. In this paper we propose an approach to Petri nets for embedding reversibility, i.e., the ability of reversing an executed sequence of operations…

Logic in Computer Science · Computer Science 2020-10-09 Anna Philippou , Kyriaki Psara

Vector addition systems with states (VASS), also known as Petri nets, are a popular model of concurrent systems. Many problems from many areas reduce to the reachability problem for VASS, which consists of deciding whether a target…

Formal Languages and Automata Theory · Computer Science 2025-05-20 Roland Guttenberg , Wojciech Czerwiński , Sławomir Lasota

Hamilton-Jacobi (HJ) reachability analysis is a widely used method for ensuring the safety of robotic systems. Traditional approaches compute reachable sets by numerically solving an HJ Partial Differential Equation (PDE) over a grid, which…

Robotics · Computer Science 2025-05-08 Zeyuan Feng , Le Qiu , Somil Bansal

Recently proposed quasi-classical DBAR-dressing method provides a systematic approach to study the weakly dispersive limit of integrable systems. We apply the quasi-classical DBAR-dressing method to describe dispersive corrections of any…

Exactly Solvable and Integrable Systems · Physics 2009-11-10 Boris Konopelchenko , Antonio Moro

Partially observable Markov decision processes (POMDPs) are a fundamental model for sequential decision-making under uncertainty. However, many verification and synthesis problems for POMDPs are undecidable or intractable. Most prominently,…

Artificial Intelligence · Computer Science 2026-04-23 Nathanaël Fijalkow , Arka Ghosh , Roman Kniazev , Guillermo A. Pérez , Pierre Vandenhove

Detectability of discrete event systems (DESs) is a property to determine a priori whether the current and subsequent states can be determined based on observations. In this paper, we investigate the verification of two detectability…

Logic in Computer Science · Computer Science 2018-11-30 Tomas Masopust , Xiang Yin

As the complexity of production processes increases, the diversity of data types drives the development of network monitoring technology. This paper mainly focuses on an online algorithm to detect serially correlated directed networks…

Applications · Statistics 2021-12-17 Miaomiao Yu , Yuhao Zhou , Fugee Tsung

We consider a class of iterative numerical methods and introduce the notion of semiglobally, practically, strictly pseudogradient (SPSP) search directions. We demonstrate the relevance of the SPSP property in modelling a variety of…

Optimization and Control · Mathematics 2017-03-14 Karla Kvaternik

Brute-force model-checking consists in exhaustive exploration of the state-space of a Petri net, and meets the dreaded state-space explosion problem. In contrast, this paper shows how to solve model-checking problems using a combination of…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-22 Yann Thierry-Mieg

Backwards reachability is an efficient zone-based approach for model checking probabilistic timed automata w.r.t. PTCTL properties. Current implementations, however, are restricted to maximum probabilities of reachability properties. In…

Logic in Computer Science · Computer Science 2022-08-26 Arnd Hartmanns , Bram Kohlen

A standard way of justifying that a certain probabilistic property holds in a system is to provide a witnessing subsystem (also called critical subsystem) for the property. Computing minimal witnessing subsystems is NP-hard already for…

Logic in Computer Science · Computer Science 2021-09-20 Simon Jantsch , Jakob Piribauer , Christel Baier

This paper proposes novel inferential procedures for discovering the network Granger causality in high-dimensional vector autoregressive models. In particular, we mainly offer two multiple testing procedures designed to control the false…

Methodology · Statistics 2024-11-14 Yoshimasa Uematsu , Takashi Yamagata

Reachability analysis is a critical tool for the formal verification of dynamical systems and the synthesis of controllers for them. Due to their computational complexity, many reachability analysis methods are restricted to systems with…

Systems and Control · Electrical Eng. & Systems 2020-07-14 Alex Devonport , Mahmoud Khaled , Murat Arcak , Majid Zamani

Neural networks (NNs) are increasingly applied in safety-critical systems such as autonomous vehicles. However, they are fragile and are often ill-behaved. Consequently, their behaviors should undergo rigorous guarantees before deployment…

Artificial Intelligence · Computer Science 2022-10-11 Zhen Liang , Dejin Ren , Wanwei Liu , Ji Wang , Wenjing Yang , Bai Xue

Computing steady-state distributions in infinite-state stochastic systems is in general a very dificult task. Product-form Petri nets are those Petri nets for which the steady-state distribution can be described as a natural product…

Performance · Computer Science 2017-08-22 Patricia Bouyer , Serge Haddad , Vincent Jugé

Recent work has made great progress in verifying the forwarding correctness of networks . However, these approaches cannot be used to verify networks containing middleboxes, such as caches and firewalls, whose forwarding behavior depends on…

Networking and Internet Architecture · Computer Science 2016-07-05 Aurojit Panda , Ori Lahav , Katerina Argyraki , Mooly Sagiv , Scott Shenker

The reachability problem is a central decision problem for formal verification based on vector addition systems with states (VASS), which are equivalent to Petri nets and form one of the most studied and applied models of concurrency.…

Formal Languages and Automata Theory · Computer Science 2020-05-12 Wojciech Czerwiński , Sławomir Lasota , Ranko Lazić , Jérôme Leroux , Filip Mazowiecki

Timed-arc Petri nets (TAPN) are a well-known time extension of the Petri net model and several translations to networks of timed automata have been proposed for this model. We present a direct, DBM-based algorithm for forward reachability…

Logic in Computer Science · Computer Science 2012-11-28 Alexandre David , Lasse Jacobsen , Morten Jacobsen , Jiří Srba