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The knowledge extraction task is to extract triple relations (head entity-relation-tail entity) from unstructured text data. The existing knowledge extraction methods are divided into "pipeline" method and joint extraction method. The…

Computation and Language · Computer Science 2022-04-01 Suyu Ouyang , Yingxia Shao , Junping Du , Ang Li

Using different sources of information to support automated extracting of relations between biomedical concepts contributes to the development of our understanding of biological systems. The primary comprehensive source of these relations…

Computation and Language · Computer Science 2020-09-21 Diana Sousa , Andre Lamurias , Francisco M. Couto

Emotion-cause pair extraction (ECPE), as an emergent natural language processing task, aims at jointly investigating emotions and their underlying causes in documents. It extends the previous emotion cause extraction (ECE) task, yet without…

Computation and Language · Computer Science 2022-12-15 Haolin Song , Chen Zhang , Qiuchi Li , Dawei Song

Biomedical entity linking (BioEL) has achieved remarkable progress with the help of pre-trained language models. However, existing BioEL methods usually struggle to handle rare and difficult entities due to long-tailed distribution. To…

Computation and Language · Computer Science 2023-12-18 Zhenxi Lin , Ziheng Zhang , Xian Wu , Yefeng Zheng

We develop methodology for causal inference in observational studies when using propensity score subclassification on data constructed with probabilistic record linkage techniques. We focus on scenarios where covariates and binary treatment…

Methodology · Statistics 2018-04-03 Joan Heck Wortman , Jerome P. Reiter

Many joint entity relation extraction models setup two separated label spaces for the two sub-tasks (i.e., entity detection and relation classification). We argue that this setting may hinder the information interaction between entities and…

Computation and Language · Computer Science 2021-07-12 Yijun Wang , Changzhi Sun , Yuanbin Wu , Hao Zhou , Lei Li , Junchi Yan

Biomedical entity linking aims to map biomedical mentions, such as diseases and drugs, to standard entities in a given knowledge base. The specific challenge in this context is that the same biomedical entity can have a wide range of names,…

Computation and Language · Computer Science 2021-05-25 Lihu Chen , Gaël Varoquaux , Fabian M. Suchanek

The inherent ambiguity of cause and effect boundaries poses a challenge in evaluating causal event extraction tasks. Traditional metrics like Exact Match and BertScore poorly reflect model performance, so we trained evaluation models to…

Computation and Language · Computer Science 2024-06-28 Italo Luis da Silva , Hanqi Yan , Lin Gui , Yulan He

Semi-supervised bootstrapping techniques for relationship extraction from text iteratively expand a set of initial seed instances. Due to the lack of labeled data, a key challenge in bootstrapping is semantic drift: if a false positive…

Computation and Language · Computer Science 2018-07-10 Pankaj Gupta , Benjamin Roth , Hinrich Schütze

The best evidence concerning comparative treatment effectiveness comes from clinical trials, the results of which are reported in unstructured articles. Medical experts must manually extract information from articles to inform…

Computation and Language · Computer Science 2022-01-11 Benjamin E. Nye , Jay DeYoung , Eric Lehman , Ani Nenkova , Iain J. Marshall , Byron C. Wallace

Harmful text detection has become a crucial task in the development and deployment of large language models, especially as AI-generated content continues to expand across digital platforms. This study proposes a joint retrieval framework…

Computation and Language · Computer Science 2025-04-04 Zidong Yu , Shuo Wang , Nan Jiang , Weiqiang Huang , Xu Han , Junliang Du

Entity Linking (EL) is a fundamental task for Information Extraction and Knowledge Graphs. The general form of EL (i.e., end-to-end EL) aims to first find mentions in the given input document and then link the mentions to corresponding…

Computation and Language · Computer Science 2024-03-21 Yinghui Li , Yong Jiang , Yangning Li , Xingyu Lu , Pengjun Xie , Ying Shen , Hai-Tao Zheng

Extracting relationships and interactions between different biological entities is still an extremely challenging problem but has not received much attention as much as extraction in other generic domains. In addition to the lack of…

Computation and Language · Computer Science 2020-06-02 Abhinav Bhatt , Kaustubh D. Dhole

Entity extraction is fundamental to many text mining tasks such as organisation name recognition. A popular approach to entity extraction is based on matching sub-string candidates in a document against a dictionary of entities. To handle…

Databases · Computer Science 2017-02-14 Zeyi Wen , Dong Deng , Rui Zhang , Kotagiri Ramamohanarao

Named entity recognition and relation extraction are two important fundamental problems. Joint learning algorithms have been proposed to solve both tasks simultaneously, and many of them cast the joint task as a table-filling problem.…

Computation and Language · Computer Science 2020-10-09 Jue Wang , Wei Lu

We submitted two systems to the SemEval-2016 Task 12: Clinical TempEval challenge, participating in Phase 1, where we identified text spans of time and event expressions in clinical notes and Phase 2, where we predicted a relation between…

Computation and Language · Computer Science 2016-06-07 Jason Alan Fries

Event extraction (EE), which acquires structural event knowledge from texts, can be divided into two sub-tasks: event type classification and element extraction (namely identifying triggers and arguments under different role patterns). As…

Computation and Language · Computer Science 2022-08-19 Qian Li , Shu Guo , Jia Wu , Jianxin Li , Jiawei Sheng , Lihong Wang , Xiaohan Dong , Hao Peng

With the advent of artificial intelligence (AI), many researchers are attempting to extract structured information from document-level biomedical literature by fine-tuning large language models (LLMs). However, they face significant…

Neural and Evolutionary Computing · Computer Science 2026-02-26 Lei Zhao , Ling Kang , Quan Guo

Overall, the two main contributions of this work include the application of sentence simplification to association extraction as described above, and the use of distributional semantics for concept extraction. The proposed work on concept…

Computation and Language · Computer Science 2011-09-13 Siddhartha Jonnalagadda

Multi-task learning is a method for improving the generalizability of multiple tasks. In order to perform multiple classification tasks with one neural network model, the losses of each task should be combined. Previous studies have mostly…

Machine Learning · Computer Science 2018-10-03 Myungsu Chae , Tae-Ho Kim , Young Hoon Shin , June-Woo Kim , Soo-Young Lee