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We present the extention and application of a new unsupervised statistical learning technique--the Partition Decoupling Method--to gene expression data. Because it has the ability to reveal non-linear and non-convex geometries present in…

Quantitative Methods · Quantitative Biology 2015-09-24 Rosemary Braun , Gregory Leibon , Scott Pauls , Daniel Rockmore

Fast and accurate sampling method is in high demand, in order to bridge the large gaps between molecular dynamic simulations and experimental observations. Recently, integrated tempering enhanced sampling method (ITS) has been proposed and…

Numerical Analysis · Mathematics 2018-06-22 Zhiyi You , Liying Li , Jianfeng Lu , Hao Ge

Virtually all electronic systems try to optimize a fundamental trade-off between higher performance and lower power consumption. The latter becomes critical in mobile computing systems, such as smartphones, which rely on passive cooling.…

Systems and Control · Electrical Eng. & Systems 2020-03-26 Ganapati Bhat , Suat Gumussoy , Umit Y. Ogras

The optimal design of power converters requires accurate knowledge of the dissipation elements of its system to achieve the desired performance and security requirements. Calorimetric methods have surpassed classical electrical methods for…

Systems and Control · Electrical Eng. & Systems 2023-11-06 Jose Miguel Sanz-Alcaine , Eduardo Sebastian , Francisco Jose Perez-Cebolla , Asier Arruti , Carlos Bernal-Ruiz , Iosu Aizpuru

Control over surface temperature is of paramount importance in optoelectronics, photocatalysis and biosensing applications, among others. Thermoplasmonic approaches have demonstrated unrivalled performance for controlling surface…

The development of advanced diagnostic systems to measure and optimize emerging energetic material performance is critical for the defeat of Chemical Warfare Agents (CWA). This study presents an integrated multi-spectroscopic approach to…

Chemical Physics · Physics 2026-01-01 Preetom Borah , Elif Irem Senyurt , Rohit Berlia , Jesse Grant , Edward Dreizin , Timothy P Weihs

Accounting for electrons and nuclei simultaneously is a powerful capability of ab initio molecular dynamics (AIMD). However, AIMD is often unable to accurately reproduce properties of systems such as water due to inaccuracies in the…

Chemical Physics · Physics 2017-01-25 Andrew D. White , Chris Knight , Glen M. Hocky , Gregory A. Voth

The recent analysis of observations taken with the EIS instrument on Hinode suggests that well constrained measurements of the temperature distribution in solar active regions can finally be made. Such measurements are critical for…

Solar and Stellar Astrophysics · Physics 2015-06-04 Harry P. Warren , Amy R. Winebarger , David H. Brooks

Nanomechanical resonators have demonstrated great potential for use as versatile tools in a number of emerging quantum technologies. For such applications, the performance of these systems is restricted by the decoherence of their fragile…

Mesoscale and Nanoscale Physics · Physics 2018-12-12 B. D. Hauer , P. H. Kim , C. Doolin , F. Souris , J. Davis

While the thermal and electromagnetic properties of plasmonic nanostructures are well understood, nanoscale thermometry still presents an experimental and theoretical challenge. Plasmonic structures can confine electromagnetic energy at the…

We live in a period where bio-informatics is rapidly expanding, a significant quantity of genomic data has been produced as a result of the advancement of high-throughput genome sequencing technology, raising concerns about the costs…

Quantitative Methods · Quantitative Biology 2023-03-10 Mehedi Hasan Sarkar , Adnan Ferdous Ashrafi

Developing efficient path integral (PI) methods for atomistic simulations of vibrational spectra in heterogeneous condensed phases and interfaces has long been a challenging task. Here, we present the h-CMD method, short for hybrid centroid…

Chemical Physics · Physics 2025-05-08 Dil K. Limbu , Nathan London , Md Omar Faruque , Mohammad R. Momeni

A set of co-aligned high resolution images from the Atmospheric Imaging Assembly (AIA) on board the Solar Dynamics Observatory (SDO) is used to investigate propagating disturbances (PDs) in warm fan loops at the periphery of a non-flaring…

Solar and Stellar Astrophysics · Physics 2015-06-17 Vadim M. Uritsky , Joseph M. Davila , Nicholeen M. Viall , Leon Ofman

A scaled-up quantum computer will require a highly efficient control interface that autonomously manipulates and reads out large numbers of qubits, which for solid-state implementations are usually held at millikelvin (mK) temperatures.…

Scaling photonic quantum-information platforms requires arrays of superconducting nanowire single-photon detectors (SNSPDs) for feedforward control, in which optical operations are conditioned on preceding Bell-state measurements that…

An approach for multiplex qualitative and quantitative microarray-based PCR analysis has been proposed. The characteristics of PCR executed on a gel-based oligonucleotide microarray with immobilized forward primers and a single common…

Quantitative Methods · Quantitative Biology 2009-01-22 Natalia V Zakharova , Alexei L Drobyshev , Dmitry A Khodakov , Anna I Myznikova , Irina A Gorban

Atomistic simulations of heat transport in complex materials are costly and hard to converge. This has led to the development of several noise-reduction techniques applicable to equilibrium molecular-dynamics (MD) simulations. We analyze…

Materials Science · Physics 2025-11-19 Sandro Wieser , YuJie Cen , Georg K. H. Madsen , Jesús Carrete

Pixel sensors based on commercial high-voltage CMOS processes are an exciting technology that is considered as an option for the outer layer of the ATLAS inner tracker upgrade at the High Luminosity LHC. Here, charged particles are detected…

It is well known that biology-inspired self-maintaining algorithms in wireless sensor nodes achieve near optimum time division multiple access (TDMA) characteristics in a decentralized manner and with very low complexity. We extend such…

Networking and Internet Architecture · Computer Science 2012-05-18 Dujdow Buranapanichkit , Yiannis Andreopoulos

We propose a parametric sampling strategy for the reduction of large-scale PDE systems with multidimensional input parametric spaces by leveraging models of different fidelity. The design of this methodology allows a user to adaptively…

Numerical Analysis · Mathematics 2023-01-24 Manisha Chetry , Domenico Borzacchiello , Lucas Lestandi , Luisa Rocha Da Silva
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