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This study focuses on open quasispecies systems with competition and death flow, described by modified Eigen and Crow-Kimura models. We examine the evolutionary adaptation process as a reaction to changes in rates. One of the fundamental…

Populations and Evolution · Quantitative Biology 2021-12-01 Igor Samokhin , Tatiana Yakushkina , Dmitry Markin , Alexander S. Bratus

We consider the Crow Kimura model, modified via stochastic resetting. There are two principally different situations: First, when due to resetting the system jumps to the low fitness state, everything is rather simple in this case, we have…

Populations and Evolution · Quantitative Biology 2022-09-15 R. Poghosyan , R. Zadourian , David B. Saakian

A new delay equation is introduced to describe the punctuated evolution of complex nonlinear systems. A detailed analytical and numerical investigation provides the classification of all possible types of solutions for the dynamics of a…

Adaptation and Self-Organizing Systems · Physics 2015-05-13 V. I. Yukalov , E. P. Yukalova , D. Sornette

While Neutral Theory famously describes the number of discrete genetic differences in populations, we consider the number of genetic backgrounds under which such differences are observed - setting limits to the generalizability of their…

Populations and Evolution · Quantitative Biology 2023-03-21 Andre F. Ribeiro

We consider a class of Cahn-Hilliard equation with kinetic rate dependent dynamic boundary conditions that describe possible short-range interactions between the binary mixture and the solid boundary. In the presence of surface diffusion on…

Analysis of PDEs · Mathematics 2024-02-08 Maoyin Lv , Hao Wu

We consider a class of nonlocal reaction-diffusion problems, referred to as replicator-mutator equations in evolutionary genetics. By using explicit changes of unknown function, we show that they are equivalent to the heat equation and,…

Analysis of PDEs · Mathematics 2020-12-16 Matthieu Alfaro , Rémi Carles

We present a new way of quantum kinetic equation derivation. This method appears as a natural generalization of the many-particle quantum hydrodynamic method. Kinetic equations are derived for different system of particles. First of all we…

Plasma Physics · Physics 2012-12-04 Pavel A. Andreev

We consider the $Q$-curvature equation \begin{equation}\label{0.1} (-\Delta)^n u = K(x)e^{2nu}\quad\text{in} ~\mathbb{R}^{2n} \ (n \geq 2) \end{equation} where $K$ is a given non constant continuous function. Under mild growth control on…

Analysis of PDEs · Mathematics 2025-02-25 Xia Huang , Dong Ye , Feng Zhou

Based on the Kraus-form solution to the master equation describing diffusion we develop an integral form solution by using the method of integration within ordered product of operators, i.e., the evolution law of density operator in…

Quantum Physics · Physics 2015-11-18 F. Gao , H. Y. Fan , F. Shuang , X. B. Tang

We consider nonlinear mutation selection models, known as replicator-mutator equations in evolutionary biology. They involve a nonlocal mutation kernel and a confining fitness potential. We prove that the long time behaviour of the Cauchy…

Analysis of PDEs · Mathematics 2023-09-25 Matthieu Alfaro , Pierre Gabriel , Otared Kavian

A new approach to understanding evolution [Val09], namely viewing it through the lens of computation, has already started yielding new insights, e.g., natural selection under sexual reproduction can be interpreted as the Multiplicative…

Populations and Evolution · Quantitative Biology 2016-04-26 Ruta Mehta , Ioannis Panageas , Georgios Piliouras , Prasad Tetali , Vijay V. Vazirani

We study a boundary value problem with an integral constraint that arises from the modelings of species competition proposed by Lou and Ni in \cite{LN2}. Through bifurcation theories, we obtain the existence of non-constant positive…

Analysis of PDEs · Mathematics 2014-05-07 Qi Wang

We study evolution equations of drift-diffusion type when various parameters are random. Motivated by applications in pedestrian dynamics, we focus on the case when the total mass is, due to boundary or reaction terms, not conserved. After…

Probability · Mathematics 2021-07-28 Greta Marino , Jan-Frederik Pietschmann , Alois Pichler

It is shown how the phase-damping master equation, either in Markovian and nonMarkovian regimes, can be obtained as an averaged random unitary evolution. This, apart from offering a common mathematical setup for both regimes, enables us to…

Quantum Physics · Physics 2015-06-26 D. Salgado , J. L. Sanchez-Gomez

An "exact discretization" of the Schroedinger operator is considered and its direct and inverse scattering problems are solved. It is shown that a differential-difference nonlinear evolution equation depending on two arbitrary constants can…

Exactly Solvable and Integrable Systems · Physics 2009-11-07 M Boiti , F Pempinelli , B Prinari , A. Spire

We use a path integral representation to solve the Eigen and Crow-Kimura molecular evolution models for the case of multiple fitness peaks with arbitrary fitness and degradation functions. In the general case, we find that the solution to…

Populations and Evolution · Quantitative Biology 2007-05-23 D. B. Saakian , E. Munoz , Chin-Kun Hu , M. W. Deem

The parallel mutation-selection evolutionary dynamics, in which mutation and replication are independent events, is solved exactly in the case that the Malthusian fitnesses associated to the genomes are described by the Random Energy Model…

Biological Physics · Physics 2009-10-14 David B. Saakian , José F. Fontanari

A well-posed initial-boundary value problem is formulated for the model problem of the vector wave equation subject to the divergence-free constraint. Existence, uniqueness and stability of the solution is proved by reduction to a system…

General Relativity and Quantum Cosmology · Physics 2007-08-23 Alexander M. Alekseenko

We consider a bistable integral equation which governs the stationary solutions of a convolution model of solid--solid phase transitions on a circle. We study the bifurcations of the set of the stationary solutions as the diffusion…

Dynamical Systems · Mathematics 2010-04-30 S. K. Bhowmik , D. B. Duncan , M. Grinfeld , G. J. Lord

The good Boussinesq equation has several modified versions such as the modified Boussinesq equation, Mikhailov-Lenells equation and Hirota-Satsuma equation. This work builds the full relations among these equations by Miura transformation…

Exactly Solvable and Integrable Systems · Physics 2024-09-17 Deng-Shan Wang , Cheng Zhu , Xiaodong Zhu