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This article presents a new method to compute matrices from numerical simulations based on the ideas of sparse sampling and compressed sensing. The method is useful for problems where the determination of the entries of a matrix constitutes…

Chemical Physics · Physics 2014-10-21 Jacob N. Sanders , Xavier Andrade , Alán Aspuru-Guzik

Score-based generative models (SGMs) have proven to be powerful tools for designing new proteins. Designing proteins that bind a pre-specified target is highly relevant to a range of medical and industrial applications. Despite the flurry…

Biomolecules · Quantitative Biology 2024-09-30 John D Boom , Matthew Greenig , Pietro Sormanni , Pietro Liò

Low-rank matrix approximation (LRMA) is a powerful technique for signal processing and pattern analysis. However, its potential for data compression has not yet been fully investigated in the literature. In this paper, we propose sparse…

Multimedia · Computer Science 2016-02-22 Junhui Hou , Lap-Pui Chau , Nadia Magnenat-Thalmann , Ying He

Sparse general matrix-matrix multiplication (spGEMM) is an essential component in many scientific and data analytics applications. However, the sparsity pattern of the input matrices and the interaction of their patterns make spGEMM…

Mathematical Software · Computer Science 2020-10-01 Orestis Zachariadis , Nitin Satpute , Juan Gómez-Luna , Joaquín Olivares

The recently proposed statistical finite element (statFEM) approach synthesises measurement data with finite element models and allows for making predictions about the unknown true system response. We provide a probabilistic error analysis…

Statistics Theory · Mathematics 2025-06-17 Toni Karvonen , Fehmi Cirak , Mark Girolami

In this paper, we propose a model's sparse representation based on reduced mixed generalized multiscale finite element (GMsFE) basis methods for elliptic PDEs with random inputs. Mixed generalized multiscale finite element method (GMsFEM)…

Numerical Analysis · Mathematics 2017-04-05 Lijian Jiang , Qiuqi Li

Sparse matrix vector multiplication (SpMV) is one of the most common operations in scientific and high-performance applications, and is often responsible for the application performance bottleneck. While the sparse matrix representation has…

Mathematical Software · Computer Science 2018-05-31 Shizhao Chen , Jianbin Fang , Donglin Chen , Chuanfu Xu , Zheng Wang

In this paper, we propose an analytical framework to quantify the amount of data samples needed to obtain accurate state estimation in a power system - a problem known as sample complexity analysis in computer science. Motivated by the…

Optimization and Control · Mathematics 2019-09-20 Joshua Comden , Marcello Colombino , Andrey Bernstein , Zhenhua Liu

We present an implementation of Pagh's compressed matrix multiplication algorithm, a randomized algorithm that constructs sketches of matrices to compute an unbiased estimate of their product. By leveraging fast polynomial multiplication…

Data Structures and Algorithms · Computer Science 2026-01-15 Joel Andersson , Matti Karppa

Neural network models are widely used in solving many challenging problems, such as computer vision, personalized recommendation, and natural language processing. Those models are very computationally intensive and reach the hardware limit…

Machine Learning · Computer Science 2020-04-28 Fei Sun , Minghai Qin , Tianyun Zhang , Liu Liu , Yen-Kuang Chen , Yuan Xie

Joint Embedding Predictive Architectures (JEPA) have emerged as a powerful framework for learning general-purpose representations. However, these models often lack interpretability and suffer from inefficiencies due to dense embedding…

Machine Learning · Computer Science 2025-04-24 Max Hartman , Lav Varshney

Gradient descent optimizations and backpropagation are the most common methods for training neural networks, but they are computationally expensive for real time applications, need high memory resources, and are difficult to converge for…

Machine Learning · Computer Science 2022-07-05 Seyyed Mostafa Mousavi Janbeh Sarayi , Mansour Nikkhah Bahrami

Several manufacturers have already started to commercialize near-bank Processing-In-Memory (PIM) architectures. Near-bank PIM architectures place simple cores close to DRAM banks and can yield significant performance and energy improvements…

Hardware Architecture · Computer Science 2022-05-24 Christina Giannoula , Ivan Fernandez , Juan Gómez-Luna , Nectarios Koziris , Georgios Goumas , Onur Mutlu

We propose a model for multiclass classification of time series to make a prediction as early and as accurate as possible. The matrix sequential probability ratio test (MSPRT) is known to be asymptotically optimal for this setting, but…

Machine Learning · Computer Science 2021-06-01 Taiki Miyagawa , Akinori F. Ebihara

Sparse matrix ordering is a vital optimization technique often employed for solving large-scale sparse matrices. Its goal is to minimize the matrix bandwidth by reorganizing its rows and columns, thus enhancing efficiency. Conventional…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-14 Tao Tang , Youfu Jiang , Yingbo Cui , Jianbin Fang , Peng Zhang , Lin Peng , Chun Huang

Convolutional neural network (CNN) inference on mobile devices demands efficient hardware acceleration of low-precision (INT8) general matrix multiplication (GEMM). Exploiting data sparsity is a common approach to further accelerate GEMM…

Hardware Architecture · Computer Science 2020-10-14 Zhi-Gang Liu , Paul N. Whatmough , Matthew Mattina

The peak performance of any SpMV depends primarily on the available memory bandwidth and its effective use. GPUs, ASICs, and new FPGAs have higher and higher bandwidth; however, for large scale and highly sparse matrices, SpMV is still a…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-02 Paolo D'Alberto , Abhishek Jain , Ismail Bustany , Henri Fraisse , Mansimran Benipal

Sparse linear regression is one of the classic problems in the field of statistics, which has deep connections and high intersections with optimization, computation, and machine learning. To address the effective handling of…

Methodology · Statistics 2025-08-04 Peili Li , Zhuomei Li , Yunhai Xiao , Chao Ying , Zhou Yu

Sparsity is a growing trend in modern DNN models. Existing Sparse-Sparse Matrix Multiplication (SpMSpM) accelerators are tailored to a particular SpMSpM dataflow (i.e., Inner Product, Outer Product or Gustavsons), that determines their…

Hardware Architecture · Computer Science 2023-01-27 Francisco Muñoz-Martínez , Raveesh Garg , José L. Abellán , Michael Pellauer , Manuel E. Acacio , Tushar Krishna

Several manufacturers have already started to commercialize near-bank Processing-In-Memory (PIM) architectures. Near-bank PIM architectures place simple cores close to DRAM banks and can yield significant performance and energy improvements…

Hardware Architecture · Computer Science 2022-04-05 Christina Giannoula , Ivan Fernandez , Juan Gómez-Luna , Nectarios Koziris , Georgios Goumas , Onur Mutlu
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