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Analysis of longitudinal Electronic Health Record (EHR) data is an important goal for precision medicine. Difficulty in applying Machine Learning (ML) methods, either predictive or unsupervised, stems in part from the heterogeneity and…

Quantitative Methods · Quantitative Biology 2022-04-18 Alan D. Kaplan , Uttara Tipnis , Jean C. Beckham , Nathan A. Kimbrel , David W. Oslin , Benjamin H. McMahon

Time series data are fundamental for a variety of applications, ranging from financial markets to energy systems. Due to their importance, the number and complexity of tools and methods used for time series analysis is constantly…

Electronic health records (EHR) contain extensive structured and unstructured data, including tabular information and free-text clinical notes. Querying relevant patient information often requires complex database operations, increasing the…

Information Retrieval · Computer Science 2025-11-27 Mengliang ZHang

Due to the cost of developing and training deep learning models from scratch, machine learning engineers have begun to reuse pre-trained models (PTMs) and fine-tune them for downstream tasks. PTM registries known as "model hubs" support…

As hybrid quantum-classical models gain traction in machine learning, there is a growing need for tools that assess their effectiveness beyond raw accuracy. We present QMetric, a Python package offering a suite of interpretable metrics to…

Quantum Physics · Physics 2025-11-17 Silvie Illésová , Tomasz Rybotycki , Martin Beseda

A large scale collection of both semantic and natural language resources is essential to leverage active Software Engineering research areas such as code reuse and code comprehensibility. Existing machine learning models ingest data from…

There is a need for open-source libraries in emission tomography that (i) use modern and popular backend code to encourage community contributions and (ii) offer support for the multitude of reconstruction techniques available in recent…

A growing number of Machine Learning Frameworks recently made Deep Learning accessible to a wider audience of engineers, scientists, and practitioners, by allowing straightforward use of complex neural network architectures and algorithms.…

Machine Learning · Computer Science 2022-12-08 Ivan Svogor , Christian Eichenberger , Markus Spanring , Moritz Neun , Michael Kopp

Appropriate treatment regimens play a vital role in improving patient health status. Although some achievements have been made, few of the recent studies of learning treatment regimens have exploited different kinds of patient information…

Computers and Society · Computer Science 2018-06-21 Khanh-Hung Hoang , Tu-Bao Ho

In this work, we present a general purpose deep neural network package for representing energies, forces, dipole moments, and polarizabilities of atomistic systems. This so-called recursively embedded atom neural network model takes both…

Chemical Physics · Physics 2022-04-06 Yaolong Zhang , Junfan Xia , Bin Jiang

A large fraction of the electronic health records (EHRs) consists of clinical measurements collected over time, such as lab tests and vital signs, which provide important information about a patient's health status. These sequences of…

Machine Learning · Statistics 2020-03-02 Karl Øyvind Mikalsen , Cristina Soguero-Ruiz , Robert Jenssen

Solving differential equations is a critical challenge across a host of domains. While many software packages efficiently solve these equations using classical numerical approaches, there has been less effort in developing a library for…

Machine Learning · Computer Science 2025-02-19 Shuheng Liu , Pavlos Protopapas , David Sondak , Feiyu Chen

Electronic Health Records (EHR) are time-series relational databases that record patient interactions and medical events over time, serving as a critical resource for healthcare research and applications. However, privacy concerns and…

Machine Learning · Computer Science 2026-03-03 Eunbyeol Cho , Jiyoun Kim , Minjae Lee , Sungjin Park , Edward Choi

Optical turbulence presents a significant challenge for communication, directed energy, and imaging systems, especially in the atmospheric boundary layer. Effective modeling of optical turbulence strength is critical for the development and…

Atmospheric and Oceanic Physics · Physics 2024-01-09 Christopher Jellen , Charles Nelson , Cody Brownell , John Burkhardt

Particle tracking is a fundamental part of the event analysis in high energy and nuclear physics. Events multiplicity increases each year along with the drastic growth of the experimental data which modern HENP detectors produce, so the…

Data Analysis, Statistics and Probability · Physics 2021-10-04 Pavel Goncharov , Egor Schavelev , Anastasia Nikolskaya , Gennady Ososkov

We present a new text-to-SQL dataset for electronic health records (EHRs). The utterances were collected from 222 hospital staff members, including physicians, nurses, and insurance review and health records teams. To construct the QA…

Computation and Language · Computer Science 2026-03-06 Gyubok Lee , Hyeonji Hwang , Seongsu Bae , Yeonsu Kwon , Woncheol Shin , Seongjun Yang , Minjoon Seo , Jong-Yeup Kim , Edward Choi

Since the beginning of this century, the significant advancements in artificial intelligence and neural networks have offered the potential to bring new transformations to short-term earthquake prediction research. However, currently, there…

Geophysics · Physics 2025-07-23 Zhiyu Xu , Qingliang Chen

Electronic Health Record (EHR) data can be represented as discrete counts over a high dimensional set of possible procedures, diagnoses, and medications. Supervised topic models present an attractive option for incorporating EHR data as…

Machine Learning · Computer Science 2019-11-21 Jason Ren , Russell Kunes , Finale Doshi-Velez

Advancements in wearable sensor technologies and the digitization of medical records have contributed to the unprecedented ubiquity of biomedical time series data. Data-driven models have tremendous potential to assist clinical diagnosis…

Machine Learning · Computer Science 2024-10-24 Chenqi Li , Timothy Denison , Tingting Zhu

Benchmarking is crucial for testing and validating any system, even more so in real-time systems. Typical real-time applications adhere to well-understood abstractions: they exhibit a periodic behavior, operate on a well-defined working…

Software Engineering · Computer Science 2022-08-02 Mattia Nicolella , Shahin Roozkhosh , Denis Hoornaert , Andrea Bastoni , Renato Mancuso
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