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This paper investigates the theoretical foundations of the t-distributed stochastic neighbor embedding (t-SNE) algorithm, a popular nonlinear dimension reduction and data visualization method. A novel theoretical framework for the analysis…

Machine Learning · Statistics 2022-11-02 T. Tony Cai , Rong Ma

Most existing graph visualization methods based on dimension reduction are limited to relatively small graphs due to performance issues. In this work, we propose a novel dimension reduction method for graph visualization, called…

Machine Learning · Computer Science 2023-10-18 Xinyu Li , Yao Xiao , Yuchen Zhou

We present GraphTSNE, a novel visualization technique for graph-structured data based on t-SNE. The growing interest in graph-structured data increases the importance of gaining human insight into such datasets by means of visualization.…

Machine Learning · Computer Science 2019-04-24 Yao Yang Leow , Thomas Laurent , Xavier Bresson

Data visualisation helps understanding data represented by multiple variables, also called features, stored in a large matrix where individuals are stored in lines and variable values in columns. These data structures are frequently called…

Human-Computer Interaction · Computer Science 2022-07-25 Haseeb Younis , Paul Trust , Rosane Minghim

Hyperspectral Imagery (and Remote Sensing in general) captured from UAVs or satellites are highly voluminous in nature due to the large spatial extent and wavelengths captured by them. Since analyzing these images requires a huge amount of…

Image and Video Processing · Electrical Eng. & Systems 2020-05-12 Megh Shukla , Biplab Banerjee , Krishna Mohan Buddhiraju

This paper shows that dimensionality reduction methods such as UMAP and t-SNE, can be approximately recast as MAP inference methods corresponding to a model introduced in Ravuri et al. (2023), that describes the graph Laplacian (an estimate…

Machine Learning · Statistics 2025-05-13 Aditya Ravuri , Neil D. Lawrence

This article presents a novel application of the t-distributed Stochastic Neighbor Embedding (t-SNE) clustering algorithm to the telecommunication field. t-SNE is a dimensionality reduction (DR) algorithm that allows the visualization of…

Signal Processing · Electrical Eng. & Systems 2023-04-28 Alejandro Ramírez-Arroyo , Luz García , Antonio Alex-Amor , Juan F. Valenzuela-Valdés

Dimensionality reduction is crucial both for visualization and preprocessing high dimensional data for machine learning. We introduce a novel method based on a hierarchy built on 1-nearest neighbor graphs in the original space which is used…

Computer Vision and Pattern Recognition · Computer Science 2022-05-31 M. Saquib Sarfraz , Marios Koulakis , Constantin Seibold , Rainer Stiefelhagen

We study the problem of visualizing large-scale and high-dimensional data in a low-dimensional (typically 2D or 3D) space. Much success has been reported recently by techniques that first compute a similarity structure of the data points…

Machine Learning · Computer Science 2016-04-06 Jian Tang , Jingzhou Liu , Ming Zhang , Qiaozhu Mei

We present a new method GTSNE to visualize high-dimensional data points in the two dimensional map. The technique is a variation of t-SNE that produces better visualizations by capturing both the local neighborhood structure and the macro…

Machine Learning · Computer Science 2021-08-04 Songting Shi

We introduce a nonlinear method for directly embedding large, sparse, stochastic graphs into low-dimensional spaces, without requiring vertex features to reside in, or be transformed into, a metric space. Graph data and models are prevalent…

Machine Learning · Computer Science 2019-06-14 Nikos Pitsianis , Alexandros-Stavros Iliopoulos , Dimitris Floros , Xiaobai Sun

$t$-SNE is an embedding method that the data science community has widely Two interesting characteristics of t-SNE are the structure preservation property and the answer to the crowding problem, where all neighbors in high dimensional space…

Machine Learning · Computer Science 2021-09-23 Gaëlle Candel , David Naccache

Nonlinear dimension reduction (NLDR) techniques such as tSNE, and UMAP provide a low-dimensional representation of high-dimensional data ($p\text{-}D$) by applying a nonlinear transformation. NLDR often exaggerates random patterns. But NLDR…

Visualization methods based on the nearest neighbor graph, such as t-SNE or UMAP, are widely used for visualizing high-dimensional data. Yet, these approaches only produce meaningful results if the nearest neighbors themselves are…

Machine Learning · Computer Science 2024-06-06 Jan Niklas Böhm , Philipp Berens , Dmitry Kobak

High-dimensional imaging is becoming increasingly relevant in many fields from astronomy and cultural heritage to systems biology. Visual exploration of such high-dimensional data is commonly facilitated by dimensionality reduction.…

Computer Vision and Pattern Recognition · Computer Science 2023-08-04 Alexander Vieth , Anna Vilanova , Boudewijn Lelieveldt , Elmar Eisemann , Thomas Höllt

The dimensionality reduction has been widely introduced to use the high-dimensional data for regression, classification, feature analysis, and visualization. As the one technique of dimensionality reduction, a stochastic neighbor embedding…

Computer Vision and Pattern Recognition · Computer Science 2020-12-03 Motoshi Abe , Junichi Miyao , Takio Kurita

A first line of attack in exploratory data analysis is data visualization, i.e., generating a 2-dimensional representation of data that makes clusters of similar points visually identifiable. Standard Johnson-Lindenstrauss dimensionality…

Machine Learning · Computer Science 2018-06-08 Sanjeev Arora , Wei Hu , Pravesh K. Kothari

This is a tutorial and survey paper for nonlinear dimensionality and feature extraction methods which are based on the Laplacian of graph of data. We first introduce adjacency matrix, definition of Laplacian matrix, and the interpretation…

Machine Learning · Statistics 2022-08-09 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley

Low-dimensional embeddings and visualizations are an indispensable tool for analysis of high-dimensional data. State-of-the-art methods, such as tSNE and UMAP, excel in unveiling local structures hidden in high-dimensional data and are…

Machine Learning · Computer Science 2023-02-01 Jonas Fischer , Rebekka Burkholz , Jilles Vreeken

t-Stochastic Neighbor Embedding (t-SNE) is a non-parametric data visualization method in classical machine learning. It maps the data from the high-dimensional space into a low-dimensional space, especially a two-dimensional plane, while…

Quantum Physics · Physics 2022-02-10 Yoshiaki Kawase , Kosuke Mitarai , Keisuke Fujii
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