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Graphical models are a powerful tool in modelling and analysing complex biological associations in high-dimensional data. The R-package netgwas implements the recent methodological development on copula graphical models to (i) construct…

Applications · Statistics 2023-01-27 Pariya Behrouzi , Danny Arends , Ernst C. Wit

Temporal point process (TPP) is an important tool for modeling and predicting irregularly timed events across various domains. Recently, the recurrent neural network (RNN)-based TPPs have shown practical advantages over traditional…

Machine Learning · Statistics 2024-06-04 Zhiheng Chen , Guanhua Fang , Wen Yu

HYPERTILING is a high-performance Python library for the generation and visualization of regular hyperbolic lattices embedded in the Poincar\'e disk model. Using highly optimized, efficient algorithms, hyperbolic tilings with millions of…

Computational Physics · Physics 2024-06-27 Manuel Schrauth , Yanick Thurn , Florian Goth , Jefferson S. E. Portela , Dietmar Herdt , Felix Dusel

The key component in forecasting demand and consumption of resources in a supply network is an accurate prediction of real-valued time series. Indeed, both service interruptions and resource waste can be reduced with the implementation of…

Neural and Evolutionary Computing · Computer Science 2018-07-24 Filippo Maria Bianchi , Enrico Maiorino , Michael C. Kampffmeyer , Antonello Rizzi , Robert Jenssen

Real-world graphs, such as social networks, financial transactions, and recommendation systems, often demonstrate dynamic behavior. This phenomenon, known as graph stream, involves the dynamic changes of nodes and the emergence and…

Machine Learning · Computer Science 2023-05-16 Yanping Zheng , Zhewei Wei , Jiajun Liu

Human close-range proximity interactions are the key determinant for spreading processes like knowledge diffusion, norm adoption, and infectious disease transmission. These dynamical processes can be modeled with time-respecting paths on…

Physics and Society · Physics 2026-05-28 Silvia Guerrini , Ciro Cattuto , Lorenzo Dall'Amico

Temporal networks are suitable for modeling complex evolving systems. It has a wide range of applications, such as social network analysis, recommender systems, and epidemiology. Recently, modeling such dynamic systems has drawn great…

Social and Information Networks · Computer Science 2022-11-15 Jiayun Wu , Tao Jia , Yansong Wang , Li Tao

Complex networks are relational data sets commonly represented as graphs. The analysis of their intricate structure is relevant to many areas of science and commerce, and data sets may reach sizes that require distributed storage and…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-01-05 Jannis Koch , Christian L. Staudt , Maximilian Vogel , Henning Meyerhenke

Graph Convolutional Networks (GCNs) are extensively utilized for deep learning on graphs. The large data sizes of graphs and their vertex features make scalable training algorithms and distributed memory systems necessary. Since the…

Machine Learning · Computer Science 2022-12-14 Gunduz Vehbi Demirci , Aparajita Haldar , Hakan Ferhatosmanoglu

Information, ideas, and diseases, or more generally, contagions, spread over space and time through individual transmissions via social networks, as well as through external sources. A detailed picture of any diffusion process can be…

Social and Information Networks · Computer Science 2021-02-08 Fangcao Xu , Bruce Desmarais , Donna Peuquet

Chemical reaction networks can be automatically generated from graph grammar descriptions, where rewrite rules model reaction patterns. Because a molecule graph is connected and reactions in general involve multiple molecules, the rewriting…

Formal Languages and Automata Theory · Computer Science 2016-04-22 Jakob L. Andersen , Christoph Flamm , Daniel Merkle , Peter F. Stadler

In this paper we describe the implementation of semi-structured deep distributional regression, a flexible framework to learn conditional distributions based on the combination of additive regression models and deep networks. Our…

Many processes of spreading and diffusion take place on temporal networks, and their outcomes are influenced by correlations in the times of contact. These correlations have a particularly strong influence on processes where the spreading…

Physics and Society · Physics 2017-09-19 Mikko Kivelä , Jordan Cambe , Jari Saramäki , Márton Karsai

Network properties govern the rate and extent of various spreading processes, from simple contagions to complex cascades. Recently, the analysis of spreading processes has been extended from static networks to temporal networks, where nodes…

Physics and Society · Physics 2019-12-18 Eun Lee , Scott Emmons , Ryan Gibson , James Moody , Peter J. Mucha

Networks are well-established representations of social systems, and temporal networks are widely used to study their dynamics. Temporal network data often consist in a succession of static networks over consecutive time windows whose…

Physics and Society · Physics 2021-09-30 Valeria Gelardi , Didier Le Bail , Alain Barrat , Nicolas Claidière

The ever increasing adoption of mobile technologies and ubiquitous services allows to sense human behavior at unprecedented levels of details and scale. Wearable sensors are opening up a new window on human mobility and proximity at the…

Physics and Society · Physics 2015-06-15 Alain Barrat , Ciro Cattuto

Graph neural networks (GNNs) fuel diverse machine learning tasks involving graph-structured data, ranging from predicting protein structures to serving personalized recommendations. Real-world graph data must often be stored distributed…

Machine Learning · Computer Science 2024-02-13 Aashish Kolluri , Sarthak Choudhary , Bryan Hooi , Prateek Saxena

Recurrent Neural Networks (RNNs) are among the most successful machine learning models for sequence modelling, but tend to suffer from an exponential increase in the number of parameters when dealing with large multidimensional data. To…

Machine Learning · Computer Science 2021-05-12 Yao Lei Xu , Danilo P. Mandic

Many time series are generated by a set of entities that interact with one another over time. This paper introduces a broad, flexible framework to learn from multiple inter-dependent time series generated by such entities. Our framework…

Neural and Evolutionary Computing · Computer Science 2016-12-16 Ashish Bora , Sugato Basu , Joydeep Ghosh

collapse is a large C/C++-based infrastructure package facilitating complex statistical computing, data transformation, and exploration tasks in R - at outstanding levels of performance and memory efficiency. It also implements a…

Computation · Statistics 2025-06-02 Sebastian Krantz