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In topological data analysis, we want to discern topological and geometric structure of data, and to understand whether or not certain features of data are significant as opposed to simply random noise. While progress has been made on…

Computational Geometry · Computer Science 2020-01-10 So Mang Han , Taylor Okonek , Nikesh Yadav , Xiaojun Zheng

This paper presents the first approach to visualize the importance of topological features that define classes of data. Topological features, with their ability to abstract the fundamental structure of complex data, are an integral…

Machine Learning · Computer Science 2023-09-26 Yu Qin , Brittany Terese Fasy , Carola Wenk , Brian Summa

While topological data analysis has emerged as a powerful paradigm for structural inference, its foundational tools, notably persistent homology and the persistent Laplacian, are frequently insensitive to localized structural fluctuations…

Algebraic Topology · Mathematics 2026-03-10 Jian Liu , Hongsong Feng , Kefeng Liu

Computational topologists recently developed a method, called persistent homology to analyze data presented in terms of similarity or dissimilarity. Indeed, persistent homology studies the evolution of topological features in terms of a…

Quantitative Methods · Quantitative Biology 2017-08-01 Pavel Petrov , Stephen T Rush , Zhichun Zhai , Christine H Lee , Peter T Kim , Giseon Heo

Appropriately representing elements in a database so that queries may be accurately matched is a central task in information retrieval; recently, this has been achieved by embedding the graphical structure of the database into a manifold in…

Machine Learning · Statistics 2023-07-10 Yueqi Cao , Athanasios Vlontzos , Luca Schmidtke , Bernhard Kainz , Anthea Monod

Topological clustering, and its main algorithm ToMATo, is a clustering method from Topological Data Analysis (TDA) which has been applied successfully in several applications during the last few years. This is due to its high versatility,…

Machine Learning · Computer Science 2026-05-15 Ludo Andrianirina , Mathieu Carrière

One of the main challenges of Topological Data Analysis (TDA) is to extract features from persistent diagrams directly usable by machine learning algorithms. Indeed, persistence diagrams are intrinsically (multi-)sets of points in…

Machine Learning · Computer Science 2022-09-27 Raphael Reinauer , Matteo Caorsi , Nicolas Berkouk

Many datasets can be viewed as a noisy sampling of an underlying space, and tools from topological data analysis can characterize this structure for the purpose of knowledge discovery. One such tool is persistent homology, which provides a…

This thesis consists of two topics related to computational geometry and one topic related to topological data analysis (TDA), which combines fields of computational geometry and algebraic topology for analyzing data. The first part studies…

Computational Geometry · Computer Science 2023-01-04 Yury Elkin

Graph Signal Processing deals with the problem of analyzing and processing signals defined on graphs. In this paper, we introduce a novel filtering method for graph-based signals by employing ideas from topological data analysis. We begin…

Signal Processing · Electrical Eng. & Systems 2024-08-27 Matias de Jong van Lier , Sebastián Elías Graiff Zurita , Shizuo Kaji

We present the application of topological data analysis (TDA) to study unweighted complex networks via their persistent homology. By endowing appropriate weights that capture the inherent topological characteristics of such a network, we…

Discrete Mathematics · Computer Science 2021-02-03 Indrava Roy , Sudharsan Vijayaraghavan , Sarath Jyotsna Ramaia , Areejit Samal

Topological Data Analysis (TDA) provides a pipeline to extract quantitative topological descriptors from structured objects. This enables the definition of topological loss functions, which assert to what extent a given object exhibits some…

Artificial Intelligence · Computer Science 2024-05-30 Mathieu Carriere , Marc Theveneau , Théo Lacombe

In the context of rapid urbanization, understanding the patterns of urban residents' activities and mobility is crucial for optimizing transportation systems and enhancing urban management efficiency. This study addresses the limitations of…

Applications · Statistics 2024-06-25 Nuoxian Huang , Yulin Wu

Recently, there has been an explosion in statistical learning literature to represent data using topological principles to capture structure and relationships. We propose a topological data analysis (TDA)-based framework, named Topological…

Machine Learning · Statistics 2025-11-10 Jordan Eckert , Elvan Ceyhan , Henry Schenck

Topological data analysis is a powerful tool for describing topological signatures in real world data. An important challenge in topological data analysis is matching significant topological signals across distinct systems. In geometry and…

Algebraic Topology · Mathematics 2025-02-19 Stephen Y Zhang , Michael P H Stumpf , Tom Needham , Agnese Barbensi

Accurate bone strength prediction is essential for assessing fracture risk, particularly in aging populations and individuals with osteoporosis. Bone imaging has evolved from X-rays and DXA to clinical computed tomography (CT), and now to…

Quantitative Methods · Quantitative Biology 2025-12-04 John Rick Manzanares , Richard Leslie Abel , Paweł Dłotko

Complex prediction models such as deep learning are the output from fitting machine learning, neural networks, or AI models to a set of training data. These are now standard tools in science. A key challenge with the current generation of…

Machine Learning · Computer Science 2022-10-21 Meng Liu , Tamal K. Dey , David F. Gleich

Topological data analysis provides a collection of tools to encapsulate and summarize the shape of data. Currently it is mainly restricted to \emph{mapper algorithm} and \emph{persistent homology}. In this paper we introduce new…

Algebraic Topology · Mathematics 2019-01-23 Paweł Dłotko

In this paper, we propose a method that extends the persistence-based topological data analysis (TDA) that is typically used for characterizing shapes to general networks. We introduce the concept of the community tree, a tree structure…

Social and Information Networks · Computer Science 2022-04-08 Wei Guo , Ruqian Chen , Yen-Chi Chen , Ashis G. Banerjee

The development of machine learning models based on computed tomography (CT) imaging has been a major focus due to the promise that imaging holds for diagnosis, staging, and prognostication. These models often rely on the extraction of…

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