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Related papers: EC-KitY: Evolutionary Computation Tool Kit in Pyth…

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Scikit-learn is a Python module integrating a wide range of state-of-the-art machine learning algorithms for medium-scale supervised and unsupervised problems. This package focuses on bringing machine learning to non-specialists using a…

Convergent evolution provides a useful framework for testing whether independent origins of similar traits share common genetic mechanisms. Evolutionary Sparse Learning with Paired Species Contrast (ESL-PSC) is an approach to identify genes…

Populations and Evolution · Quantitative Biology 2026-05-28 John B. Allard , Sudhir Kumar

Evolutionary Game Theory (EGT) simulations are used to model populations undergoing biological and cultural evolution in a range of fields, from biology to economics to linguistics. In this paper we present DyPy, an open source Python…

Populations and Evolution · Quantitative Biology 2020-07-29 Anjalika Nande , Andrew Ferdowsian , Eric Lubin , Erez Yoeli , Martin Nowak

Inspired by natural evolutionary processes, Evolutionary Computation (EC) has established itself as a cornerstone of Artificial Intelligence. Recently, with the surge in data-intensive applications and large-scale complex systems, the…

Neural and Evolutionary Computing · Computer Science 2024-04-16 Beichen Huang , Ran Cheng , Zhuozhao Li , Yaochu Jin , Kay Chen Tan

Evolutionary computation is an important component within various fields such as artificial intelligence research, reinforcement learning, robotics, industrial automation and/or optimization, engineering design, etc. Considering the…

Neural and Evolutionary Computing · Computer Science 2023-05-23 Nihat Engin Toklu , Timothy Atkinson , Vojtěch Micka , Paweł Liskowski , Rupesh Kumar Srivastava

We survey eight recent works by our group, involving the successful blending of evolutionary algorithms with machine learning and deep learning: 1. Binary and Multinomial Classification through Evolutionary Symbolic Regression, 2. Classy…

Neural and Evolutionary Computing · Computer Science 2023-06-09 Moshe Sipper , Achiya Elyasaf , Tomer Halperin , Zvika Haramaty , Raz Lapid , Eyal Segal , Itai Tzruia , Snir Vitrack Tamam

Alloy cluster expansions (CEs) provide an accurate and computationally efficient mapping of the potential energy surface of multi-component systems that enables comprehensive sampling of the many-dimensional configuration space. Here, we…

The covariance matrix adaptation evolution strategy (CMA-ES) has been highly effective in black-box continuous optimization, as demonstrated by its success in both benchmark problems and various real-world applications. To address the need…

Neural and Evolutionary Computing · Computer Science 2026-02-10 Masahiro Nomura , Masashi Shibata , Ryoki Hamano

\texttt{ml\_edm} is a Python 3 library, designed for early decision making of any learning tasks involving temporal/sequential data. The package is also modular, providing researchers an easy way to implement their own triggering strategy…

Integrating Large Language Models (LLMs) and Evolutionary Computation (EC) represents a promising avenue for advancing artificial intelligence by combining powerful natural language understanding with optimization and search capabilities.…

Neural and Evolutionary Computing · Computer Science 2025-05-22 Dikshit Chauhan , Bapi Dutta , Indu Bala , Niki van Stein , Thomas Bäck , Anupam Yadav

The Python robotics ecosystem faces a challenge: while many libraries exist for rigid body transformations, few are both lightweight and mathematically strict. This paper introduces SE3Kit, a lightweight Python library efficient operations…

Robotics · Computer Science 2026-05-22 Daniyal Maroufi , Omid Rezayof , Farshid Alambeigi

Bayesian Knowledge Tracing, a model used for cognitive mastery estimation, has been a hallmark of adaptive learning research and an integral component of deployed intelligent tutoring systems (ITS). In this paper, we provide a brief history…

Mathematical Software · Computer Science 2021-06-01 Anirudhan Badrinath , Frederic Wang , Zachary Pardos

The library scikit-fda is a Python package for Functional Data Analysis (FDA). It provides a comprehensive set of tools for representation, preprocessing, and exploratory analysis of functional data. The library is built upon and integrated…

Simulated evolution of biological networks can be used to generate functional networks as well as investigate hypotheses regarding natural evolution. A handful of studies have shown how simulated evolution can be used for studying the…

Quantitative Methods · Quantitative Biology 2010-05-17 Deepak Chandran , Herbert M. Sauro

In this work, we present scikit-fingerprints, a Python package for computation of molecular fingerprints for applications in chemoinformatics. Our library offers an industry-standard scikit-learn interface, allowing intuitive usage and easy…

Software Engineering · Computer Science 2025-08-12 Jakub Adamczyk , Piotr Ludynia

Designing scientific instrumentation often requires exploring large, highly constrained design spaces using computationally expensive physics simulations. These simulators pose substantial challenges for integrating evolutionary computation…

scikit-multilearn is a Python library for performing multi-label classification. The library is compatible with the scikit/scipy ecosystem and uses sparse matrices for all internal operations. It provides native Python implementations of…

Machine Learning · Computer Science 2018-12-11 Piotr Szymański , Tomasz Kajdanowicz

In this paper, we introduce eipy--an open-source Python package for developing effective, multi-modal heterogeneous ensembles for classification. eipy simultaneously provides both a rigorous, and user-friendly framework for comparing and…

Machine Learning · Computer Science 2024-12-11 Jamie J. R. Bennett , Aviad Susman , Yan Chak Li , Gaurav Pandey

In Artificial Intelligence, there is an increasing demand for adaptive models capable of dealing with a diverse spectrum of learning tasks, surpassing the limitations of systems devised to cope with a single task. The recent emergence of…

Neural and Evolutionary Computing · Computer Science 2024-07-15 Javier Poyatos , Javier Del Ser , Salvador Garcia , Hisao Ishibuchi , Daniel Molina , Isaac Triguero , Bing Xue , Xin Yao , Francisco Herrera

scikit-image is an image processing library that implements algorithms and utilities for use in research, education and industry applications. It is released under the liberal "Modified BSD" open source license, provides a well-documented…

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