Related papers: RNA foldings and Stuck Knots
Sutured manifolds defined by Gabai are useful in the geometrical study of knots and 3-dimensional manifolds. On the other hand, homology cylinders are in an important position in the recent theory of homology cobordisms of surfaces and…
Twisted Alexander invariants of knots are well-defined up to multiplication of units. We get rid of this multiplicative ambiguity via a combinatorial method and define normalized twisted Alexander invariants. We then show that the…
We define new invariants of knots by means of quandle colorings and longitudinal information. These invariants can be applied to a tangle embedding problem and recognizing non-classical virtual knots.
Topological entanglements are abundant, and often detrimental, in polymeric systems in biology and materials science. Here we theoretically investigate the topological simplification of knots by diffusing slip-links (SLs), which may…
I present a summary of the recent progress made in field and string theory which has led to a reformulation of quantum-group polynomial invariants for knots and links into new polynomial invariants whose coefficients can be described in…
We consider a quiver structure on the set of quandle colorings of an oriented knot or link diagram. This structure contains a wealth of knot and link invariants and provides a categorification of the quandle counting invariant in the most…
Background: RNA exhibits a variety of structural configurations. Here we consider a structure to be tantamount to the noncrossing Watson-Crick and \pairGU-base pairings (secondary structure) and additional cross-serial base pairs. These…
We introduce and study knots and links in 2-dimensional complexes. In particular, we define linking numbers for oriented two-component links in 2-complexes and a Kauffman-type bracket polynomial for links in 2-complexes. We also discuss…
Knots are entangled structures that cannot be untangled without a cut. Topological stability of knots is one of the many examples of their important properties that can be used in information storage and transfer. Knot dynamics is important…
In GT/0006019 oriented quantum algebras were motivated and introduced in a natural categorical setting. Invariants of knots and links can be computed from oriented quantum algebras, and this includes the Reshetikhin-Turaev theory for Ribbon…
In this paper we introduce a new invariant of virtual knots and links that is non-trivial for infinitely many virtuals, but is trivial on classical knots and links. The invariant is initially be expressed in terms of a relative of the…
In this study, we use a correspondence between two-periodic weft-knitted textiles and links in the thickened torus to study the former using link invariants. We establish a criterion to identify the set of links whose elements are realized…
This article surveys the use of configuration space integrals in the study of the topology of knot and link spaces. The main focus is the exposition of how these integrals produce finite type invariants of classical knots and links. More…
We initiate the study of classical knots through the homotopy class of the n-th evaluation map of the knot, which is the induced map on the compactified n-point configuration space. Sending a knot to its n-th evaluation map realizes the…
RNA folding prediction remains challenging, but can be also studied using a topological mathematical approach. In the present paper, the mathematical method to compute the topological classification of RNA structures and based on matrix…
We extend knot contact homology to a theory over the ring $\mathbb{Z}[\lambda^{\pm 1},\mu^{\pm 1}]$, with the invariant given topologically and combinatorially. The improved invariant, which is defined for framed knots in $S^3$ and can be…
Existing state-of-the-art methods that take a single RNA sequence and predict the corresponding RNA secondary-structure are thermodynamic methods. These predict the most stable RNA structure, but do not consider the process of structure…
We introduce new skein invariants of links based on a procedure where we first apply the skein relation only to crossings of distinct components, so as to produce collections of unlinked knots. We then evaluate the resulting knots using a…
Using the covering involution on the double branched cover of the three-sphere branched along a knot, and adapting ideas of Hendricks-Manolescu and Hendricks-Hom-Lidman, we define new knot invariants and apply them to deduce novel linear…
We consider the Non-Abelian Chern-Simons term coupled to external particles, in a gauge and diffeomorphism invariant form. The classical equations of motion are perturbativelly studied, and the on-shell action is shown to produce…