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The success of neural networks across most machine learning tasks and the persistence of adversarial examples have made the verification of such models an important quest. Several techniques have been successfully developed to verify…

Machine Learning · Computer Science 2019-10-14 Nathanaël Fijalkow , Mohit Kumar Gupta

Machine learning (ML) models are increasingly being used in metrology applications. However, for ML models to be credible in a metrology context they should be accompanied by principled uncertainty quantification. This paper addresses the…

Machine Learning · Computer Science 2024-05-09 Andrew Thompson

Extreme learning machine (ELM) as a neural network algorithm has shown its good performance, such as fast speed, simple structure etc, but also, weak robustness is an unavoidable defect in original ELM for blended data. We present a new…

Machine Learning · Computer Science 2014-09-24 Bo Han , Bo He , Rui Nian , Mengmeng Ma , Shujing Zhang , Minghui Li , Amaury Lendasse

We propose a frame-based representation of k-mers for detecting sequencing errors and rare variants in next generation sequencing data obtained from populations of closely related genomes. Frames are sets of non-orthogonal basis functions,…

Genomics · Quantitative Biology 2016-04-19 Raunaq Malhotra , Manjari Mukhopadhyay , Mary Poss , Raj Acharya

We present a new technique for rapid modeling and construction of scientifically accurate mesoscale biological models. Resulting 3D models are based on few 2D microscopy scans and the latest knowledge about the biological entity represented…

Large language models (LLMs) have demonstrated significant utility in real-world applications, exhibiting impressive capabilities in natural language processing and understanding. Benchmark evaluations are crucial for assessing the…

Computation and Language · Computer Science 2026-05-12 Wenbo Zhang , Hengrui Cai , Wenyu Chen

Benchmarking quantum devices is a foundational task for the sustained development of quantum technologies. However, accurate in situ characterization of large-scale quantum devices remains a formidable challenge: such systems experience…

Quantum Physics · Physics 2025-10-14 Tudor Manole , Daniel K. Mark , Wenjie Gong , Bingtian Ye , Yury Polyanskiy , Soonwon Choi

Multi-sequence MRIs can be necessary for reliable diagnosis in clinical practice due to the complimentary information within sequences. However, redundant information exists across sequences, which interferes with mining efficient…

Computer Vision and Pattern Recognition · Computer Science 2023-02-02 Luyi Han , Tao Tan , Tianyu Zhang , Yunzhi Huang , Xin Wang , Yuan Gao , Jonas Teuwen , Ritse Mann

Accurate and robust trajectory predictions of road users are needed to enable safe automated driving. To do this, machine learning models are often used, which can show erratic behavior when presented with previously unseen inputs. In this…

Artificial Intelligence · Computer Science 2023-04-05 Manuel Muñoz Sánchez , Emilia Silvas , Jos Elfring , René van de Molengraft

A growing number of universities worldwide use various forms of online and blended learning as part of their academic curricula. Furthermore, the recent changes caused by the COVID-19 pandemic have led to a drastic increase in importance…

Machine Learning · Computer Science 2022-09-05 Galina Deeva , Johannes De Smedt , Cecilia Saint-Pierre , Richard Weber , Jochen De Weerdt

Safety goes first. Meeting and maintaining industry safety standards for robustness of artificial intelligence (AI) and machine learning (ML) models require continuous monitoring for faults and performance drops. Deep learning models are…

Machine Learning · Computer Science 2023-02-03 Aria Khademi , Michael Hopka , Devesh Upadhyay

Repeated waves of emerging variants during the SARS-CoV-2 pandemics have highlighted the urge of collecting longitudinal genomic data and developing statistical methods based on time series analyses for detecting new threatening lineages…

Quantitative Methods · Quantitative Biology 2025-01-14 Alexandra Lefebvre , Vincent Maréchal , Arnaud Gloaguen , Obépine Consortium , Amaury Lambert , Yvon Maday

The evaluation of code-generating Large Language Models (LLMs) is fundamentally constrained by two intertwined challenges: a reliance on static, easily contaminated problem sources and the use of superficial, low-rigor testing. This paper…

Software Engineering · Computer Science 2026-02-04 Zhe Zhang , Runlin Liu , Aishan Liu , Xingyu Liu , Xiang Gao , Hailong Sun

Coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has a worldwide devastating effect. The understanding of evolution and transmission of SARS-CoV-2 is of paramount importance for the…

Quantitative Methods · Quantitative Biology 2021-01-01 Yuta Hozumi , Rui Wang , Changchuan Yin , Guo-Wei Wei

Self-Supervised Learning (SSL) is crucial for real-world applications, especially in data-hungry domains such as healthcare and self-driving cars. In addition to a lack of labeled data, these applications also suffer from distributional…

Computer Vision and Pattern Recognition · Computer Science 2022-12-26 Ha Manh Bui , Iliana Maifeld-Carucci

Generative models are becoming a tool of choice for exploring the molecular space. These models learn on a large training dataset and produce novel molecular structures with similar properties. Generated structures can be utilized for…

During a virus's evolution,various regions of the genome are subjected to distinct levels of functional constraints.Combined with factors like codon bias and DNA repair efficiency,these constraints contribute to unique mutation patterns…

Quantitative Methods · Quantitative Biology 2024-12-25 Vishwajeet Marathe , Deewan Bajracharya , Changhui Yan

A primary challenge in semi-supervised learning (SSL) for segmentation is the confirmation bias from noisy pseudo-labels, which destabilizes training and degrades performance. We propose Inconsistency Masks (IM), a framework that reframes…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Michael R. H. Vorndran , Bernhard F. Roeck

Multiple sclerosis is a disease that affects the brain and spinal cord, it can lead to severe disability and has no known cure. The majority of prior work in machine learning for multiple sclerosis has been centered around using Magnetic…

Machine Learning · Computer Science 2023-09-12 Alexander Norcliffe , Lev Proleev , Diana Mincu , Fletcher Lee Hartsell , Katherine Heller , Subhrajit Roy

Advanced classification algorithms are being increasingly used in safety-critical applications like health-care, engineering, etc. In such applications, miss-classifications made by ML algorithms can result in substantial financial or…

Machine Learning · Computer Science 2024-12-06 Disha Ghandwani , Neeraj Sarna , Yuanyuan Li , Yang Lin