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DNA barcoding has emerged as a cost-effective approach for species identification. However, the scarcity of tools used for searching the booming reference database becomes an obstacle, currently with BLAST as the only practical choice.…

Populations and Evolution · Quantitative Biology 2014-07-15 Long Fan , Ka Hou Chu

Consistent hashing (CH) has been pivotal as a data router and load balancer in diverse fields, including distributed databases, cloud infrastructure, and peer-to-peer networks. However, existing CH algorithms often fall short in…

Data Structures and Algorithms · Computer Science 2023-11-21 Chao Dong , Fang Wang , Dan Feng

Consistent hashing is fundamental to distributed systems, but ring-based schemes can exhibit high peak-to-average load ratios unless they use many virtual nodes, while multi-probe methods improve balance at the cost of scattered memory…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-30 Yongjie Guan

Approximate k-Nearest Neighbour (ANN) methods are often used for mining information and aiding machine learning on large scale high-dimensional datasets. ANN methods typically differ in the index structure used for accelerating searches,…

Machine Learning · Computer Science 2025-02-04 Ben Harwood , Amir Dezfouli , Iadine Chades , Conrad Sanderson

In large scale systems, approximate nearest neighbour search is a crucial algorithm to enable efficient data retrievals. Recently, deep learning-based hashing algorithms have been proposed as a promising paradigm to enable data dependent…

Machine Learning · Computer Science 2019-02-12 Jo Schlemper , Jose Caballero , Andy Aitken , Joost van Amersfoort

DARTS search space (DSS) has become a canonical benchmark for NAS whereas some emerging works pointed out the issue of narrow accuracy range and claimed it would hurt the method ranking. We observe some recent studies already suffer from…

Machine Learning · Computer Science 2023-06-13 Jiuling Zhang , Zhiming Ding

Recently, locality sensitive hashing (LSH) was shown to be effective for MIPS and several algorithms including $L_2$-ALSH, Sign-ALSH and Simple-LSH have been proposed. In this paper, we introduce the norm-range partition technique, which…

Machine Learning · Computer Science 2018-11-06 Xiao Yan , Xinyan Dai , Jie Liu , Kaiwen Zhou , James Cheng

Given a large dataset of binary codes and a binary query point, we address how to efficiently find $K$ codes in the dataset that yield the largest cosine similarities to the query. The straightforward answer to this problem is to compare…

Databases · Computer Science 2018-04-19 Sepehr Eghbali , Ladan Tahvildari

Edit distance similarity search, also called approximate pattern matching, is a fundamental problem with widespread database applications. The goal of the problem is to preprocess $n$ strings of length $d$, to quickly answer queries $q$ of…

Data Structures and Algorithms · Computer Science 2020-07-10 Samuel McCauley

Approximate K nearest neighbor (AKNN) search is a fundamental and challenging problem. We observe that in high-dimensional space, the time consumption of nearly all AKNN algorithms is dominated by that of the distance comparison operations…

Data Structures and Algorithms · Computer Science 2023-03-20 Jianyang Gao , Cheng Long

Nearest neighbor search aims to obtain the samples in the database with the smallest distances from them to the queries, which is a basic task in a range of fields, including computer vision and data mining. Hashing is one of the most…

Computer Vision and Pattern Recognition · Computer Science 2022-04-26 Xiao Luo , Haixin Wang , Daqing Wu , Chong Chen , Minghua Deng , Jianqiang Huang , Xian-Sheng Hua

The Apriori algorithm is a classical algorithm for the frequent itemset mining problem. A significant bottleneck in Apriori is the number of I/O operation involved, and the number of candidates it generates. We investigate the role of LSH…

Databases · Computer Science 2016-03-08 Debajyoti Bera , Rameshwar Pratap

In the field of database deduplication, the goal is to find approximately matching records within a database. Blocking is a typical stage in this process that involves cheaply finding candidate pairs of records that are potential matches…

Databases · Computer Science 2020-08-20 Andrew Borthwick , Stephen Ash , Bin Pang , Shehzad Qureshi , Timothy Jones

Approximate nearest neighbour (ANN) search has become a central task in modern data-intensive applications, particularly when operating on large, heterogeneous, or high-dimensional datasets. However, many existing ANN methods struggle in…

Information Retrieval · Computer Science 2026-01-15 Elena Garcia-Morato , Maria Jesus Algar , Cesar Alfaro , Felipe Ortega , Javier Gomez , Javier M. Moguerza

Kernel methods have produced state-of-the-art results for a number of NLP tasks such as relation extraction, but suffer from poor scalability due to the high cost of computing kernel similarities between natural language structures. A…

Computation and Language · Computer Science 2019-05-22 Sahil Garg , Aram Galstyan , Greg Ver Steeg , Irina Rish , Guillermo Cecchi , Shuyang Gao

Relevance Models are well-known retrieval models and capable of producing competitive results. However, because they use query expansion they can be very slow. We address this slowness by incorporating two variants of locality sensitive…

Information Retrieval · Computer Science 2016-07-12 Dominik Wurzer , Miles Osborne , Victor Lavrenko

We present a data structure for *spherical range reporting* on a point set $S$, i.e., reporting all points in $S$ that lie within radius $r$ of a given query point $q$. Our solution builds upon the Locality-Sensitive Hashing (LSH) framework…

Data Structures and Algorithms · Computer Science 2017-04-11 Thomas D. Ahle , Martin Aumüller , Rasmus Pagh

Finding the nearest subspace is a fundamental problem and influential to many applications. In particular, a scalable solution that is fast and accurate for a large problem has a great impact. The existing methods for the problem are,…

Computer Vision and Pattern Recognition · Computer Science 2016-03-30 Masakazu Iwamura , Masataka Konishi , Koichi Kise

As the structural databases continue to expand, efficient methods are required to search similar structures of the query structure from the database. There are many previous works about comparing protein 3D structures and scanning the…

Databases · Computer Science 2011-02-16 Gook-Pil Roh , Seung-won Hwang , Byoung-Kee Yi

Nearest Neighbor Search (NNS) over generalized weighted distances is fundamental to a wide range of applications. The problem of NNS over the generalized weighted square Euclidean distance has been studied in previous work. However,…

Databases · Computer Science 2021-10-19 Huan Hu , Jianzhong Li