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Biological cells in soft materials can be modeled as anisotropic force contraction dipoles. The corresponding elastic interaction potentials are long-ranged ($\sim 1/r^3$ with distance $r$) and depend sensitively on elastic constants,…

Soft Condensed Matter · Physics 2009-11-07 U. S. Schwarz , S. A. Safran

A growth model for porous sedimentary rocks is proposed, using a simple computer simulation algorithm. We generate the structure by ballistic deposition of particles with a bimodal size distribution. Porosity and specific surface area are…

Condensed Matter · Physics 2009-10-30 Sujata Tarafdar , Shashwati Roy

Boundary Representation (B-Rep) is the widely adopted standard in Computer-Aided Design (CAD) and manufacturing. However, generative modeling of B-Reps remains a formidable challenge due to their inherent heterogeneity as geometric cell…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Junran Lu , Yuanqi Li , Hengji Li , Jie Guo , Yanwen Guo

Cellular structures found in nature exhibit remarkable properties such as high strength, high energy absorption, excellent thermal/acoustic insulation, and fluid transfusion. Many of these structures are Voronoi-like; therefore researchers…

Computational Engineering, Finance, and Science · Computer Science 2024-04-30 Rahul Kumar Padhy , Krishnan Suresh , Aaditya Chandrasekhar

Data-driven cell tracking and segmentation methods in biomedical imaging require diverse and information-rich training data. In cases where the number of training samples is limited, synthetic computer-generated data sets can be used to…

Computer Vision and Pattern Recognition · Computer Science 2023-10-16 David Wiesner , Julian Suk , Sven Dummer , Tereza Nečasová , Vladimír Ulman , David Svoboda , Jelmer M. Wolterink

Mechanical metamaterials are periodic lattice structures with complex unit cell architectures that can achieve extraordinary mechanical properties beyond the capability of bulk materials. A new class of metamaterials is proposed, whose…

Applied Physics · Physics 2022-07-22 Marius Wagner , Fabian Schwarz , Nick Huber , Lena Geistlich , Henning Galinski , Ralph Spolenak

Homotopy is an important feature of associative and Jordan algebraic structures: such structures always come in families whose members need not be isomorphic among other, but still share many important properties. One may regard homotopy as…

Rings and Algebras · Mathematics 2007-05-23 Wolfgang Bertram

We study conformational transitions of simple coarse-grained models for protein-like heteropolymers on the simple cubic lattice and off-lattice, respectively, by means of multicanonical sampling algorithms. The effective hydrophobic/polar…

Soft Condensed Matter · Physics 2015-05-13 Michael Bachmann , Wolfhard Janke

We describe a new generation of algorithms capable of mapping the structure and conformations of macromolecules and their complexes from large ensembles of heterogeneous snapshots, and demonstrate the feasibility of determining both…

Biological Physics · Physics 2014-04-30 P. Schwander , R. Fung , A. Ourmazd

An object in motivic homotopy theory is called cellular if it can be built out of motivic spheres using homotopy colimit constructions. We explore some examples and consequences of cellularity. We explain why the algebraic K-theory and…

Algebraic Topology · Mathematics 2014-10-01 Daniel Dugger , Daniel C. Isaksen

Porous electrodes are an integral part of many electrochemical devices since they have high porosity to maximize electrochemical transport and high surface area to maximize activity. Traditional porous electrode materials are typically…

Applied Physics · Physics 2022-05-23 Thomas Roy , Miguel A. Salazar de Troya , Marcus A. Worsley , Victor A. Beck

A flat sheet programmed with a planar pattern of spontaneous shape change will morph into a curved surface. Such metric mechanics is seen in growing biological sheets, and may be engineered in actuating soft matter sheets such as…

Soft Condensed Matter · Physics 2022-07-01 Fan Feng , Daniel Duffy , Mark Warner , John S. Biggins

Natural organisms utilize distributed actuation through their musculoskeletal systems to adapt their gait for traversing diverse terrains or to morph their bodies for varied tasks. A longstanding challenge in robotics is to emulate this…

We propose a model of the functional architecture of curvature sensible cells in the visual cortex that associates curvature with scale. The feature space of orientation and position is naturally enhanced via its oriented prolongation,…

Neurons and Cognition · Quantitative Biology 2025-04-24 Vasiliki Liontou

While high-resolution microscopic techniques are crucial for studying cellular structures in cell biology, obtaining such images from thick 3D engineered tissues remains challenging. In this review, we explore advancements in fluorescence…

Tissues and Organs · Quantitative Biology 2025-02-07 Yasaman Kargar Gaz Kooh , Nathaniel Huebsch

The application of single-cell molecular profiling coupled with spatial technologies has enabled charting cellular heterogeneity in reference tissues and in disease. This new wave of molecular data has highlighted the expected diversity of…

Tissues and Organs · Quantitative Biology 2024-03-12 Ricardo Omar Ramirez Flores , Philipp Sven Lars Schäfer , Leonie Küchenhoff , Julio Saez-Rodriguez

The behaviour and fate of tissue cells is controlled by the rigidity and geometry of their adhesive environment, possibly through forces localized to sites of adhesion. We introduce a mechanical model that predicts cellular force…

Cell Behavior · Quantitative Biology 2009-07-24 Ilka B. Bischofs , Sebastian S. Schmidt , Ulrich S. Schwarz

In the design and analysis of composite materials based on periodic arrangements of sub-units it is of paramount importance to control the emergent material symmetry in relation to the elastic response. The target material symmetry plays…

Mathematical Physics · Physics 2023-06-27 Giulio G. Giusteri , Raimondo Penta

We discuss the formation of graded morphogen profiles in a cell layer by nonlinear transport phenomena, important for patterning developing organisms. We focus on a process termed transcytosis, where morphogen transport results from binding…

Other Quantitative Biology · Quantitative Biology 2007-05-23 T. Bollenbach , K. Kruse , P. Pantazis , M. González-Gaitán , F. Jülicher

Crystal growth processes produce a diverse array of surface formations, primarily distinguished by their geometric shapes. While some structures strictly adhere to the underlying crystal symmetry, others exhibit universal circular or oval…

Materials Science · Physics 2026-03-10 Marta A. Chabowska , Magdalena A. Załuska-Kotur
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