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The number of graph neural network (GNN) architectures has increased rapidly due to the growing adoption of graph analysis. Although we use GNNs in wide application scenarios, it is a laborious task to design/select optimal GNN…

Machine Learning · Computer Science 2025-11-05 Yuya Sasaki

Recently, the study of graph neural network (GNN) has attracted much attention and achieved promising performance in molecular property prediction. Most GNNs for molecular property prediction are proposed based on the idea of learning the…

Machine Learning · Computer Science 2021-04-15 Yingfang Yuan , Wenjun Wang , Wei Pang

Graph neural networks (GNNs) have emerged as powerful tools for learning protein structures by capturing spatial relationships at the residue level. However, existing GNN-based methods often face challenges in learning multiscale…

Machine Learning · Computer Science 2026-02-03 Shih-Hsin Wang , Yuhao Huang , Taos Transue , Justin Baker , Jonathan Forstater , Thomas Strohmer , Bao Wang

This paper introduces AutoGCN, a generic Neural Architecture Search (NAS) algorithm for Human Activity Recognition (HAR) using Graph Convolution Networks (GCNs). HAR has gained attention due to advances in deep learning, increased data…

Computer Vision and Pattern Recognition · Computer Science 2024-03-13 Felix Tempel , Inga Strümke , Espen Alexander F. Ihlen

Graph similarity computation aims to predict a similarity score between one pair of graphs to facilitate downstream applications, such as finding the most similar chemical compounds similar to a query compound or Fewshot 3D Action…

Machine Learning · Computer Science 2021-01-06 Haoyan Xu , Ziheng Duan , Jie Feng , Runjian Chen , Qianru Zhang , Zhongbin Xu , Yueyang Wang

Link prediction is a crucial task in graph machine learning with diverse applications. We explore the interplay between node attributes and graph topology and demonstrate that incorporating pre-trained node attributes improves the…

Machine Learning · Computer Science 2023-07-19 Ayan Chatterjee , Robin Walters , Giulia Menichetti , Tina Eliassi-Rad

Graph Neural Networks (GNNs) have been widely applied to various fields for learning over graph-structured data. They have shown significant improvements over traditional heuristic methods in various tasks such as node classification and…

Machine Learning · Computer Science 2022-06-10 Seongjun Yun , Seoyoon Kim , Junhyun Lee , Jaewoo Kang , Hyunwoo J. Kim

Graph neural architecture search (GraphNAS) has demonstrated advantages in mitigating performance degradation of graph neural networks (GNNs) due to distribution shifts. Recent approaches introduce weight sharing across tailored…

Machine Learning · Computer Science 2025-03-07 Qiyi Wang , Yinning Shao , Yunlong Ma , Min Liu

Self-supervised learning has shown its promising capability in graph representation learning in recent work. Most existing pre-training strategies usually choose the popular Graph neural networks (GNNs), which can be seen as a special form…

Machine Learning · Computer Science 2023-06-16 Yilin Ding , Zhen Liu , Hao Hao

Neural parameter allocation search (NPAS) automates parameter sharing by obtaining weights for a network given an arbitrary, fixed parameter budget. Prior work has two major drawbacks we aim to address. First, there is a disconnect in the…

Computer Vision and Pattern Recognition · Computer Science 2023-12-05 Piotr Teterwak , Soren Nelson , Nikoli Dryden , Dina Bashkirova , Kate Saenko , Bryan A. Plummer

Graph Neural Networks (GNNs) for prediction tasks like node classification or edge prediction have received increasing attention in recent machine learning from graphically structured data. However, a large quantity of labeled graphs is…

Machine Learning · Computer Science 2021-11-22 Yuexin Wu , Yichong Xu , Aarti Singh , Yiming Yang , Artur Dubrawski

In order to advance large-scale graph machine learning, the Open Graph Benchmark Large Scale Challenge (OGB-LSC) was proposed at the KDD Cup 2021. The PCQM4M-LSC dataset defines a molecular HOMO-LUMO property prediction task on about 3.8M…

Graph neural networks (GNNs) demonstrate a robust capability for representation learning on graphs with complex structures, showcasing superior performance in various applications. The majority of existing GNNs employ a graph convolution…

Machine Learning · Computer Science 2025-02-19 Jinlu Wang , Jipeng Guo , Yanfeng Sun , Junbin Gao , Shaofan Wang , Yachao Yang , Baocai Yin

Graph neural networks (GNNs) have attracted much attention due to their ability to leverage the intrinsic geometries of the underlying data. Although many different types of GNN models have been developed, with many benchmarking procedures…

Neural architecture search (NAS) is a hot topic in the field of automated machine learning and outperforms humans in designing neural architectures on quite a few machine learning tasks. Motivated by the natural representation form of…

Neural and Evolutionary Computing · Computer Science 2021-09-30 Xuan Wu , Linhan Jia , Xiuyi Zhang , Liang Chen , Yanchun Liang , You Zhou , Chunguo Wu

Machine learning (ML) methods have gained increasing popularity in exploring and developing new materials. More specifically, graph neural network (GNN) has been applied in predicting material properties. In this work, we develop a novel…

Computational Physics · Physics 2020-08-18 Steph-Yves Louis , Yong Zhao , Alireza Nasiri , Xiran Wong , Yuqi Song , Fei Liu , Jianjun Hu

The Internet is composed of networks, called Autonomous Systems (or, ASes), interconnected to each other, thus forming a large graph. While both the AS-graph is known and there is a multitude of data available for the ASes (i.e., node…

Networking and Internet Architecture · Computer Science 2022-10-26 Dimitrios Panteleimon Giakatos , Sofia Kostoglou , Pavlos Sermpezis , Athena Vakali

Neural architecture search (NAS) has witnessed prevailing success in image classification and (very recently) segmentation tasks. In this paper, we present the first preliminary study on introducing the NAS algorithm to generative…

Computer Vision and Pattern Recognition · Computer Science 2019-08-13 Xinyu Gong , Shiyu Chang , Yifan Jiang , Zhangyang Wang

Graph neural networks have recently become a standard method for analysing chemical compounds. In the field of molecular property prediction, the emphasis is now put on designing new model architectures, and the importance of atom…

Chemical Physics · Physics 2021-02-15 Agnieszka Pocha , Tomasz Danel , Łukasz Maziarka

Graph neural networks (GNN) extends deep learning to graph-structure dataset. Similar to Convolutional Neural Networks (CNN) using on image prediction, convolutional and pooling layers are the foundation to success for GNN on graph…

Machine Learning · Computer Science 2023-02-28 Lingjie Kong , Yun Liao
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