Related papers: Trees and forests for nonequilibrium purposes: an …
The notion of a nonequilibrium heat capacity is important for bio-energetics and for calorimetry of active materials more generally. It centers around the notion of excess heat or excess work dissipated during a quasistatic relaxation…
Kirchhoff's matrix tree theorem is a well-known result that gives a formula for the number of spanning trees in a finite, connected graph in terms of the graph Laplacian matrix. A closely related result is Wilson's algorithm for putting the…
By revisiting the Kirchhoff's Matrix-Tree Theorem, we give an exact formula for the number of spanning trees of a graph in terms of the quantum relative entropy between the maximally mixed state and another state specifically obtained from…
Exact eigendecomposition of large matrices is very expensive, and it is practically impossible to compute exact eigenvalues. Instead, one may set a more modest goal of approaching the empirical distribution of the eigenvalues, recovering…
Generalizing response theory of open systems far from equilibrium is a central quest of nonequilibrium statistical physics. Using stochastic thermodynamics, we develop an algebraic method to study the response of nonequilibrium steady state…
We study spanning diverging forests of a digraph and related matrices. It is shown that the normalized matrix of out forests of a digraph coincides with the transition matrix in a specific observation model for Markov chains related to the…
This paper is a variation on the uniform spanning tree theme. We use random spanning forests to solve the following problem: for a Markov process on a finite set of size $n$, find a probability law on the subsets of any given size $m \leq…
We design a theoretic tree-based functional representation of a class of Feynman-Kac particle distributions, including an extension of the Wick product formula to interacting particle systems. These weak expansions rely on an original…
Hidden tree Markov models allow learning distributions for tree structured data while being interpretable as nondeterministic automata. We provide a concise summary of the main approaches in literature, focusing in particular on the…
Using the matrix-forest theorem and the Parisi-Sourlas trick we formulate and solve a one-matrix model with non-polynomial potential which provides perturbation theory for massive spinless fermions on dynamical planar graphs. This is a…
Given a hypergraph G, we introduce a Grassmann algebra over the vertex set, and show that a class of Grassmann integrals permits an expansion in terms of spanning hyperforests. Special cases provide the generating functions for rooted and…
This thesis focuses on the applications of mathematical tools and concepts brought from nonequilibrium statistical physics to the modeling of ecological problems. The first part provides a short introduction where the theoretical concepts…
Graph Neural Networks (GNNs) have achieved remarkable success across a range of learning tasks. However, scaling GNNs to large graphs remains a significant challenge, especially for graph-level tasks. In this work, we introduce SHAKE-GNN, a…
Despite substantial progress in non-equilibrium physics, steady-state (s.s.) probabilities remain intractable to analysis. For a Markov process, s.s. probabilities can be expressed in terms of transition rates using the Matrix-Tree theorem…
Quantum graphs model processes in complex systems represented as spatial networks in various fields of natural science and technology. An example is the oscillations of elastic string networks, the nodes of which, besides the continuity…
We provide a new representation of an $\mathbb R$-tree by using a special set of metric rays. We have captured the four-point condition from these metric rays and shown an equivalence between the $\mathbb R$-trees with radial and river…
Using ideas from algebraic topology and statistical mechanics, we generalize Kirchhoff's network and matrix-tree theorems to finite CW complexes of arbitrary dimension. As an application, we give a formula expressing Reidemeister torsion as…
We study the generating function of rooted and unrooted hyperforests in a general complete hypergraph with n vertices by using a novel Grassmann representation of their generating functions. We show that this new approach encodes the known…
Using the theory of electrical network, we first obtain a simple formula for the number of spanning trees of a complete bipartite graph containing a certain matching or a certain tree. Then we apply the effective resistance (i.e.,…
We give new general formulas for the asymptotics of the number of spanning trees of a large graph. A special case answers a question of McKay (1983) for regular graphs. The general answer involves a quantity for infinite graphs that we call…