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Even though novel imaging techniques have been successful in studying brain structure and function, the measured biological signals are often contaminated by multiple sources of noise, arising due to e.g. head movements of the individual…

Computer Vision and Pattern Recognition · Computer Science 2025-05-20 Brice Ozenne , Martin Norgaard , Cyril Pernet , Melanie Ganz

We present the Automated Photometry Of Transients (AutoPhOT) package, a novel automated pipeline that is designed for rapid, publication-quality photometry of astronomical transients. AutoPhOT is built from the ground up using Python 3 -…

Instrumentation and Methods for Astrophysics · Physics 2023-09-07 S. J. Brennan , M. Fraser

ESCAPE is a free python package and framework for creating applications for simulating and fitting of X-ray and neutron scattering data with current support for specular reflectivity, polarized neutron reflectometry, high resolution X-ray…

Computational Engineering, Finance, and Science · Computer Science 2020-11-11 Denis Korolkov , Stepan Rakhimov

Here, I present the community with exoTEDRF (EXOplanet Transit and Eclipse Data Reduction Framework; formerly known as supreme-SPOON), an end-to-end pipeline for data reduction and light curve analysis of time series observations (TSOs) of…

Instrumentation and Methods for Astrophysics · Physics 2024-07-26 Michael Radica

Analysis pipelines commonly use high-level technologies that are popular when created, but are unlikely to be readable, executable, or sustainable in the long term. A set of criteria is introduced to address this problem: Completeness (no…

Spectral line observations encode a wealth of information. A key challenge, therefore, lies in the interpretation of these observations in terms of models to derive the physical and chemical properties of the astronomical environments from…

Instrumentation and Methods for Astrophysics · Physics 2024-09-06 Frederik De Ceuster , Thomas Ceulemans , Leen Decin , Taïssa Danilovich , Jeremy Yates

SparseChem provides fast and accurate machine learning models for biochemical applications. Especially, the package supports very high-dimensional sparse inputs, e.g., millions of features and millions of compounds. It is possible to train…

Machine Learning · Statistics 2022-03-10 Adam Arany , Jaak Simm , Martijn Oldenhof , Yves Moreau

Multi-product pipelines are a highly efficient means of transporting liquids. Traditionally used to transport petroleum, its products and derivatives, they are now being repurposed to transport liquified natural gas admixed with hydrogen of…

Optimization and Control · Mathematics 2023-12-19 Ales Wodecki , Pavel Rytir , Vyacheslav Kungurtsev , Jakub Marecek

Most of the space projects or large observatories do have official tools like simulators, end-to-end pipelines developed during years by a large team of contributors. They are like {\em cathedrals}. In this paper, we show that very…

Instrumentation and Methods for Astrophysics · Physics 2025-02-20 R. Gastaud , A. Coulais

With the arrival of a number of wide-field snapshot image-plane radio transient surveys, there will be a huge influx of images in the coming years making it impossible to manually analyse the datasets. Automated pipelines to process the…

PEPit is a Python package aiming at simplifying the access to worst-case analyses of a large family of first-order optimization methods possibly involving gradient, projection, proximal, or linear optimization oracles, along with their…

Optimization and Control · Mathematics 2024-06-18 Baptiste Goujaud , Céline Moucer , François Glineur , Julien Hendrickx , Adrien Taylor , Aymeric Dieuleveut

Spatial join is a fundamental operation in spatial databases. With the rapid growth of 3D data in applications such as LiDAR-based object detection and 3D digital pathology, there is an increasing need to support spatial join over 3D…

Databases · Computer Science 2026-04-23 Lyuheng Yuan , Da Yan , Akhlaque Ahmad , Fusheng Wang

Data volumes and rates of research infrastructures will continue to increase in the upcoming years and impact how we interact with their final data products. Little of the processed data can be directly investigated and most of it will be…

Instrumentation and Methods for Astrophysics · Physics 2024-04-23 Michael A. C. Johnson , Hans-Rainer Klöckner , Albina Muzafarova , Kristen Lackeos , David J. Champion , Marta Dembska , Sirko Schindler , Marcus Paradies

First-principles computational spectroscopy is a critical tool for interpreting experiment, performing structure refinement, and developing new physical understanding. Systematically setting up input files for different simulation codes and…

Interactive response time is important in analytical pipelines for users to explore a sufficient number of possibilities and make informed business decisions. We consider a forecasting pipeline with large volumes of high-dimensional time…

Databases · Computer Science 2021-01-19 Shuyuan Yan , Bolin Ding , Wei Guo , Jingren Zhou , Zhewei Wei , Xiaowei Jiang , Sheng Xu

This is a user guide for the first version of our developed Maple library, named Singularity. The first version here is designed for the qualitative study of local real zeros of scalar smooth maps. This library will be extended for symbolic…

Dynamical Systems · Mathematics 2018-03-13 Majid Gazor , Mahsa Kazemi

Binary code is pervasive, and binary analysis is a key task in reverse engineering, malware classification, and vulnerability discovery. Unfortunately, while there exist large corpora of malicious binaries, obtaining high-quality corpora of…

Cryptography and Security · Computer Science 2024-11-05 Chang Liu , Rebecca Saul , Yihao Sun , Edward Raff , Maya Fuchs , Townsend Southard Pantano , James Holt , Kristopher Micinski

We have written an automatic image processing pipeline for the Advanced Camera for Surveys (ACS) Guaranteed Time Observation (GTO) program. The pipeline, known as Apsis, supports the different cameras available on the ACS instrument and is…

Astrophysics · Physics 2007-05-23 J. P. Blakeslee , K. R. Anderson , G. R. Meurer , N. Benitez , D. Magee

Litrepl is a lightweight text processing tool designed to recognize and evaluate code sections within Markdown or Latex documents. This functionality is useful for both batch document section evaluation and interactive coding within a text…

Software Engineering · Computer Science 2025-01-22 Sergei Mironov