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Analogical reasoning, the transfer of relational structures across contexts (e.g., planet is to sun as electron is to nucleus), is fundamental to scientific discovery. Yet human insight is often constrained by domain expertise and…

Machine Learning · Computer Science 2025-10-28 Hongyu Guo

This research introduces a novel text generation model that combines BERT's semantic interpretation strengths with GPT-4's generative capabilities, establishing a high standard in generating coherent, contextually accurate language. Through…

Computation and Language · Computer Science 2024-11-20 Jiajing Chen , Shuo Wang , Zhen Qi , Zhenhong Zhang , Chihang Wang , Hongye Zheng

It has been found that Transformer-based language models have the ability to perform basic quantitative reasoning. In this paper, we propose a method for studying how these models internally represent numerical data, and use our proposal to…

Computation and Language · Computer Science 2024-04-26 Ulme Wennberg , Gustav Eje Henter

Vector embeddings derived from large language models (LLMs) show promise in capturing latent information from the literature. Interestingly, these can be integrated into material embeddings, potentially useful for data-driven predictions of…

Computation and Language · Computer Science 2024-09-19 Luke P. J. Gilligan , Matteo Cobelli , Hasan M. Sayeed , Taylor D. Sparks , Stefano Sanvito

Proteins adopt multiple structural conformations to perform their diverse biological functions, and understanding these conformations is crucial for advancing drug discovery. Traditional physics-based simulation methods often struggle with…

Biomolecules · Quantitative Biology 2025-03-14 Jiarui Lu , Xiaoyin Chen , Stephen Zhewen Lu , Chence Shi , Hongyu Guo , Yoshua Bengio , Jian Tang

Recent progress in neural machine translation is directed towards larger neural networks trained on an increasing amount of hardware resources. As a result, NMT models are costly to train, both financially, due to the electricity and…

Computation and Language · Computer Science 2020-05-19 Tom Kocmi , Ondřej Bojar

Can we leverage LLMs to model the process of discovering novel language model (LM) architectures? Inspired by real research, we propose a multi-agent LLM approach that simulates the conventional stages of research, from ideation and…

Artificial Intelligence · Computer Science 2025-06-26 Junyan Cheng , Peter Clark , Kyle Richardson

We consider controllable DNA sequence design, where sequences are generated by conditioning on specific biological properties. While language models (LMs) such as GPT and BERT have achieved remarkable success in natural language generation,…

Machine Learning · Computer Science 2025-12-10 Xingyu Su , Xiner Li , Yuchao Lin , Ziqian Xie , Degui Zhi , Shuiwang Ji

Recent advancements in specialized large-scale architectures for training image and language have profoundly impacted the field of computer vision and natural language processing (NLP). Language models, such as the recent ChatGPT and GPT4…

Biomolecules · Quantitative Biology 2023-05-04 Sergio Romero-Romero , Sebastian Lindner , Noelia Ferruz

Large language models (LLMs) are often trained on extensive, temporally indiscriminate text corpora, reflecting the lack of datasets with temporal metadata. This approach is not aligned with the evolving nature of language. Conventional…

Computation and Language · Computer Science 2024-04-30 Felix Drinkall , Eghbal Rahimikia , Janet B. Pierrehumbert , Stefan Zohren

Pre-trained LLMs have demonstrated substantial capabilities across a range of conventional natural language processing (NLP) tasks, such as summarization and entity recognition. In this paper, we explore the application of LLMs in the…

Quantitative Methods · Quantitative Biology 2024-08-14 Kamyar Zeinalipour , Neda Jamshidi , Monica Bianchini , Marco Maggini , Marco Gori

The amount of data has growing significance in exploring cutting-edge materials and a number of datasets have been generated either by hand or automated approaches. However, the materials science field struggles to effectively utilize the…

Computation and Language · Computer Science 2023-04-13 Tong Xie , Yuwei Wan , Wei Huang , Yufei Zhou , Yixuan Liu , Qingyuan Linghu , Shaozhou Wang , Chunyu Kit , Clara Grazian , Wenjie Zhang , Bram Hoex

Understanding structure-property relationships in materials is fundamental in condensed matter physics and materials science. Over the past few years, machine learning (ML) has emerged as a powerful tool for advancing this understanding and…

The impact of Transformer-based language models has been unprecedented in Natural Language Processing (NLP). The success of such models has also led to their adoption in other fields including bioinformatics. Taking this into account, this…

Machine Learning · Computer Science 2025-07-21 Nimisha Ghosh , Daniele Santoni , Debaleena Nawn , Eleonora Ottaviani , Giovanni Felici

Model driven development envisages the use of model transformations to evolve models. Model transformation languages, developed for this task, are touted with many benefits over general purpose programming languages. However, a large number…

Software Engineering · Computer Science 2022-08-19 Stefan Höppner , Yves Haas , Matthias Tichy , Katharina Juhnke

Molecular property prediction and generative design via deep learning models has been the subject of intense research given its potential to accelerate development of new, high-performance materials. More recently, these workflows have been…

Artificial Intelligence · Computer Science 2024-12-16 Nathaniel H. Park , Tiffany J. Callahan , James L. Hedrick , Tim Erdmann , Sara Capponi

A common training approach for language models involves using a large-scale language model to expand a human-provided dataset, which is subsequently used for model training.This method significantly reduces training costs by eliminating the…

Computation and Language · Computer Science 2025-07-09 Minghang Zhu , Shen Gao , Zhengliang Shi , Jiabao Fang , Pengjie Ren , Zhaochun Ren , Zhumin Chen , Shuo Shang

Pretrained language models (PLMs) have demonstrated remarkable performance in various natural language processing tasks: Unidirectional PLMs (e.g., GPT) are well known for their superior text generation capabilities; bidirectional PLMs…

Computation and Language · Computer Science 2022-10-13 Yu Meng , Jiaxin Huang , Yu Zhang , Jiawei Han

Exploring the predictive capabilities of language models in material science is an ongoing interest. This study investigates the application of language model embeddings to enhance material property prediction in materials science. By…

Computation and Language · Computer Science 2024-11-05 Yuwei Wan , Tong Xie , Nan Wu , Wenjie Zhang , Chunyu Kit , Bram Hoex

The rapid advancement of large language models (LLMs) such as GPT-3, PaLM, and Llama has significantly transformed natural language processing, showcasing remarkable capabilities in understanding and generating language. However, a…

Computation and Language · Computer Science 2026-05-15 Yifan Zhang
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