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A Boolean network (BN) is a discrete dynamical system defined by a Boolean function that maps to the domain itself. A trap space of a BN is a generalization of a fixed point, which is defined as the sub-hypercubes closed by the function of…

Discrete Mathematics · Computer Science 2024-10-21 Kyungduk Moon , Kangbok Lee , Loïc Paulevé

Massive multiple-input multiple-output (MIMO) communication systems have a huge potential both in terms of data rate and energy efficiency, although channel estimation becomes challenging for a large number of antennas. Using a physical…

Signal Processing · Electrical Eng. & Systems 2021-12-10 Taha Yassine , Luc Le Magoarou

Probabilistic Boolean Networks (PBNs) have been previously proposed so as to gain insights into complex dy- namical systems. However, identification of large networks and of the underlying discrete Markov Chain which describes their…

Machine Learning · Computer Science 2018-01-24 Ifigeneia Apostolopoulou , Diana Marculescu

Boolean Networks (BNs) describe the time evolution of binary states using logic functions on the nodes of a network. They are fundamental models for complex discrete dynamical systems, with applications in various areas of science and…

Discrete Mathematics · Computer Science 2025-03-26 Van-Giang Trinh , Samuel Pastva , Jordan Rozum , Kyu Hyong Park , Réka Albert

Bayesian Neural Networks (BNNs) are trained to optimize an entire distribution over their weights instead of a single set, having significant advantages in terms of, e.g., interpretability, multi-task learning, and calibration. Because of…

Machine Learning · Computer Science 2022-10-07 Jary Pomponi , Simone Scardapane , Aurelio Uncini

The area of Smart Power Grids needs to constantly improve its efficiency and resilience, to pro-vide high quality electrical power, in a resistant grid, managing faults and avoiding failures. Achieving this requires high component…

Machine Learning · Computer Science 2021-02-03 Pedro J. Rivera Torres , Carlos Gershenson García , Samir Kanaan Izquierdo

Bayesian neural networks (BNNs) offer the potential for reliable uncertainty quantification and interpretability, which are critical for trustworthy AI in high-stakes domains. However, existing methods often struggle with issues such as…

Machine Learning · Computer Science 2025-01-28 Romeo Sommerfeld , Christian Helms , Ralf Herbrich

Modeling natural phenomena with artificial neural networks (ANNs) often provides highly accurate predictions. However, ANNs often suffer from over-parameterization, complicating interpretation and raising uncertainty issues. Bayesian neural…

Machine Learning · Statistics 2025-03-14 Eirik Høyheim , Lars Skaaret-Lund , Solve Sæbø , Aliaksandr Hubin

Boolean Networks (BNs) are established models to qualitatively describe biological systems. The analysis of BNs might be infeasible for medium to large BNs due to the state-space explosion problem. We propose a novel reduction technique…

Computational Engineering, Finance, and Science · Computer Science 2021-07-01 Georgios Argyris , Alberto Lluch Lafuente , Mirco Tribastone , Max Tschaikowski , Andrea Vandin

Scientific machine learning (SciML) increasingly requires models that capture multimodal conditional uncertainty arising from ill-posed inverse problems, multistability, and chaotic dynamics. While recent work has favored highly expressive…

Machine Learning · Computer Science 2026-02-03 Leonardo Ferreira Guilhoto , Akshat Kaushal , Paris Perdikaris

Partially-observed Boolean dynamical systems (POBDS) are a general class of nonlinear models with application in estimation and control of Boolean processes based on noisy and incomplete measurements. The optimal minimum mean square error…

Methodology · Statistics 2017-03-08 Mahdi Imani , Ulisses Braga-Neto

Asymptotic behaviors are often of particular interest when analyzing Boolean networks that represent biological systems such as signal trans- duction or gene regulatory networks. Methods based on a generalization of the steady state notion,…

Dynamical Systems · Mathematics 2015-09-30 Hannes Klarner , Alexander Bockmayr , Heike Siebert

Biologically-informed neural networks (BINNs), an extension of physics-informed neural networks [1], are introduced and used to discover the underlying dynamics of biological systems from sparse experimental data. In the present work, BINNs…

Quantitative Methods · Quantitative Biology 2021-01-27 John H. Lagergren , John T. Nardini , Ruth E. Baker , Matthew J. Simpson , Kevin B. Flores

This work introduces B-spline Movement Primitives (BMPs), a new Movement Primitive (MP) variant that leverages B-splines for motion representation. B-splines are a well-known concept in motion planning due to their ability to generate…

Robotics · Computer Science 2024-12-23 Weiran Liao , Ge Li , Hongyi Zhou , Rudolf Lioutikov , Gerhard Neumann

Bayesian network (BN) modelling is extensively used in systems epidemiology. Usually it consists in selecting and reporting the best-fitting structure conditional to the data. A major practical concern is avoiding overfitting, on account of…

Computation · Statistics 2019-02-19 Gilles Kratzer , Reinhard Furrer

Energy-based models are popular in machine learning due to the elegance of their formulation and their relationship to statistical physics. Among these, the Restricted Boltzmann Machine (RBM), and its staple training algorithm contrastive…

Machine Learning · Computer Science 2015-04-09 Daniel Jiwoong Im , Ethan Buchman , Graham W. Taylor

This paper studies the interpretability of neural network features from a Bayesian Gaussian view, where optimizing a cost is reaching a probabilistic bound; learning a model approximates a density that makes the bound tight and the cost…

Machine Learning · Computer Science 2025-11-18 Bo Hu , Jose C. Principe

Random boolean networks are a model of genetic regulatory networks that has proven able to describe experimental data in biology. They not only reproduce important phenomena in cell dynamics, but they are also extremely interesting from a…

Dynamical Systems · Mathematics 2015-02-26 Marco Villani , Davide Campioli , Chiara Damiani , Andrea Roli , Alessandro Filisetti , Roberto Serra

Emergence of robustness in biological networks is a paramount feature of evolving organisms, but a study of this property in vivo, for any level of representation such as Genetic, Metabolic, or Neuronal Networks, is a very hard challenge.…

Molecular Networks · Quantitative Biology 2012-10-18 Vitor H. P. Louzada , Fabrício M. Lopes , Ronaldo F. Hashimoto

We introduce a novel normal form representation of Boolean functions in terms of products of binary matrices, hereafter referred to as the Binary Matrix Product (BMP) representation. BMPs are analogous to the Tensor-Trains (TT) and Matrix…

Data Structures and Algorithms · Computer Science 2025-05-13 Umut Eren Usturali , Claudio Chamon , Andrei E. Ruckenstein , Eduardo R. Mucciolo