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Raman spectroscopy is a non-destructive and label-free chemical analysis technique, which plays a key role in the analysis and discovery cycle of various branches of science. Nonetheless, progress in Raman spectroscopic analysis is still…

Quantum computers are becoming a reality and numerous quantum computing applications with a near-term perspective (e.g., for finance, chemistry, machine learning, and optimization) and with a long-term perspective (e.g., for cryptography or…

Quantum annealing offers a promising paradigm for solving NP-hard combinatorial optimization problems, but its practical application is severely hindered by two challenges: the complex, manual process of translating problem descriptions…

Machine Learning · Computer Science 2025-09-03 Huixiang Zhang , Mahzabeen Emu , Salimur Choudhury

We present Qibo, a new open-source software for fast evaluation of quantum circuits and adiabatic evolution which takes full advantage of hardware accelerators. The growing interest in quantum computing and the recent developments of…

The rapid advancements in quantum computing necessitate a scientific and rigorous approach to the construction of a corresponding software ecosystem, a topic underexplored and primed for systematic investigation. This chapter takes an…

We present TUNA, an open-source quantum chemistry program specifically designed for atoms and diatomic molecules. Within this narrow molecular domain, a broad and consistent set of electronic structure methods and calculation types is…

Chemical Physics · Physics 2026-04-03 Harry Brough

Bayesian Networks (BNs) are used in various fields for modeling, prediction, and decision making. pgmpy is a python package that provides a collection of algorithms and tools to work with BNs and related models. It implements algorithms for…

Machine Learning · Computer Science 2023-04-19 Ankur Ankan , Johannes Textor

We present Qibolab, an open-source software library for quantum hardware control integrated with the Qibo quantum computing middleware framework. Qibolab provides the software layer required to automatically execute circuit-based algorithms…

Quantum chemistry is a foundational enabling tool for the fields of chemistry, materials science, computational biology and others. Despite of its power, the practical application of quantum chemistry simulations remains in the hands of…

Just like the scientific data they generate, simulation workflows for research should be findable, accessible, interoperable, and reusable (FAIR). However, while significant progress has been made towards FAIR data, the majority of science…

Digital Libraries · Computer Science 2022-05-04 Martin Hunt , Steven Clark , Daniel Mejia , Saaketh Desai , Alejandro Strachan

We describe how Python can be leveraged to streamline the curation, modelling and dissemination of drug discovery data as well as the development of innovative, freely available tools for the related scientific community. We look at various…

Other Computer Science · Computer Science 2016-07-05 Michał Nowotka , George Papadatos , Mark Davies , Nathan Dedman , Anne Hersey

We present QUBOLite, a Python package for the creation, manipulation, analysis, and solution of Quadratic Unconstrained Binary Optimization (QUBO) instances. Built as a thin wrapper around NumPy arrays, QUBOLite combines efficient numerical…

Mathematical Software · Computer Science 2025-09-29 Sascha Mücke , Thore Gerlach , Nico Piatkowski , Lukas Theißinger

The first associations to software sustainability might be the existence of a continuous integration (CI) framework; the existence of a testing framework composed of unit tests, integration tests, and end-to-end tests; and also the…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-19 Terry Cojean , Yu-Hsiang "Mike" Tsai , Hartwig Anzt

Distributed, large-scale quantum computing will need architectures that combine matter-based qubits with photonic links, but today's software stacks target either gate-based chips or linear-optical devices in isolation. We introduce Optyx,…

We present Trieste, an open-source Python package for Bayesian optimization and active learning benefiting from the scalability and efficiency of TensorFlow. Our library enables the plug-and-play of popular TensorFlow-based models within…

DRalgo is an algorithmic implementation that constructs an effective, dimensionally reduced, high-temperature field theory for generic models. The corresponding Mathematica package automatically performs the matching to next-to-leading…

High Energy Physics - Phenomenology · Physics 2023-04-26 Andreas Ekstedt , Philipp Schicho , Tuomas V. I. Tenkanen

We present QuantumToolbox$.$jl, an open-source Julia package for simulating open quantum systems. Designed with a syntax familiar to users of QuTiP (Quantum Toolbox in Python), it harnesses Julia's high-performance ecosystem to deliver fast…

Quantum Physics · Physics 2025-10-06 Alberto Mercurio , Yi-Te Huang , Li-Xun Cai , Yueh-Nan Chen , Vincenzo Savona , Franco Nori

Systematic exploration of hypotheses is a major part of any empirical research. In software engineering, we often produce unique tools for experiments and evaluate them independently on different data sets. In this paper, we present…

Software Engineering · Computer Science 2021-10-13 Christian Kröher , Sascha El-Sharkawy , Klaus Schmid

Quantum computers promise to transform our notions of computation by offering a completely new paradigm. To achieve scalable quantum computation, optimizing compilers and a corresponding software design flow will be essential. We present a…

Programming Languages · Computer Science 2018-07-24 Thomas Häner , Damian S. Steiger , Krysta Svore , Matthias Troyer

SparseChem provides fast and accurate machine learning models for biochemical applications. Especially, the package supports very high-dimensional sparse inputs, e.g., millions of features and millions of compounds. It is possible to train…

Machine Learning · Statistics 2022-03-10 Adam Arany , Jaak Simm , Martijn Oldenhof , Yves Moreau