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We introduce top trees as a design of a new simpler interface for data structures maintaining information in a fully-dynamic forest. We demonstrate how easy and versatile they are to use on a host of different applications. For example, we…

Data Structures and Algorithms · Computer Science 2007-05-23 Stephen Alstrup , Jacob Holm , Kristian de Lichtenberg , Mikkel Thorup

Understanding the response of an output variable to multi-dimensional inputs lies at the heart of many data exploration endeavours. Topology-based methods, in particular Morse theory and persistent homology, provide a useful framework for…

Graphics · Computer Science 2022-08-16 Yarden Livnat , Dan Maljovec , Attila Gyulassy , Dr Baptiste Mouginot , Valerio Pascucci

Neuroscientific data analysis has classically involved methods for statistical signal and image processing, drawing on linear algebra and stochastic process theory. However, digitized neuroanatomical data sets containing labelled neurons,…

Computational Geometry · Computer Science 2018-05-15 Suyi Wang , Xu Li , Partha Mitra , Yusu Wang

Data structures known as $k$-d trees have numerous applications in scientific computing, particularly in areas of modern statistics and data science such as range search in decision trees, clustering, nearest neighbors search, local…

Data Structures and Algorithms · Computer Science 2022-01-21 Aritra Chakravorty , William S. Cleveland , Patrick J. Wolfe

In social networks, information and influence diffuse among users as cascades. While the importance of studying cascades has been recognized in various applications, it is difficult to observe the complete structure of cascades in practice.…

Social and Information Networks · Computer Science 2012-10-15 Bo Zong , Yinghui Wu , Ambuj K. Singh , Xifeng Yan

Tree decompositions were developed by Robertson and Seymour. Since then algorithms have been developed to solve intractable problems efficiently for graphs of bounded treewidth. In this paper we extend tree decompositions to allow cycles to…

Data Structures and Algorithms · Computer Science 2007-05-23 Melanie J. Agnew , Christopher M. Homan

Measuring the complexity of tree structures can be beneficial in areas that use tree data structures for storage, communication, and processing purposes. This complexity can then be used to compress tree data structures to their…

Information Theory · Computer Science 2023-09-19 Amirmohammad Farzaneh , Mihai-Alin Badiu , Justin P. Coon

Tree sets are posets with additional structure that generalize tree-like objects in graphs, matroids, or other combinatorial structures. They are a special class of abstract separation systems. We study infinite tree sets and how they…

Combinatorics · Mathematics 2025-05-16 Jay Lilian Kneip

In this work we answer an open question asked by Johnson--Scoville. We show that each merge tree is represented by a discrete Morse function on a path. Furthermore, we present explicit constructions for two different but related kinds of…

Algebraic Topology · Mathematics 2023-01-04 Julian Brüggemann

Succinct data structures give space-efficient representations of large amounts of data without sacrificing performance. They rely one cleverly designed data representations and algorithms. We present here the formalization in Coq/SSReflect…

Programming Languages · Computer Science 2019-07-03 Reynald Affeldt , Jacques Garrigue , Xuanrui Qi , Kazunari Tanaka

The Subtree Isomorphism problem asks whether a given tree is contained in another given tree. The problem is of fundamental importance and has been studied since the 1960s. For some variants, e.g., ordered trees, near-linear time algorithms…

Computational Complexity · Computer Science 2015-10-16 Amir Abboud , Arturs Backurs , Thomas Dueholm Hansen , Virginia Vassilevska Williams , Or Zamir

Tree convex sets refer to a collection of sets such that each set in the collection is a subtree of a tree whose nodes are the elements of these sets. They extend the concept of row convex sets each of which is an interval over a total…

Data Structures and Algorithms · Computer Science 2009-06-03 Yuanlin Zhang , Forrest Sheng Bao

A discretisation scheme that preserves topological features of a physical problem is extended so that differential geometric structures can be approximated in a consistent way thus giving access to the study of physical systems which are…

High Energy Physics - Theory · Physics 2007-05-23 Vivien de Beauce , Siddhartha Sen

Dual-tree algorithms are a widely used class of branch-and-bound algorithms. Unfortunately, developing dual-tree algorithms for use with different trees and problems is often complex and burdensome. We introduce a four-part logical split:…

Data Structures and Algorithms · Computer Science 2013-04-17 Ryan R. Curtin , William B. March , Parikshit Ram , David V. Anderson , Alexander G. Gray , Charles L. Isbell

Differential calculus on discrete sets is developed in the spirit of noncommutative geometry. Any differential algebra on a discrete set can be regarded as a `reduction' of the `universal differential algebra' and this allows a systematic…

High Energy Physics - Theory · Physics 2009-10-28 A. Dimakis , F. Müller-Hoissen

Merge trees are a type of graph-based topological summary that tracks the evolution of connected components in the sublevel sets of scalar functions. They enjoy widespread applications in data analysis and scientific visualization. In this…

Computational Geometry · Computer Science 2022-02-03 Ellen Gasparovic , Elizabeth Munch , Steve Oudot , Katharine Turner , Bei Wang , Yusu Wang

The availability of graph data with node attributes that can be either discrete or real-valued is constantly increasing. While existing kernel methods are effective techniques for dealing with graphs having discrete node labels, their…

Machine Learning · Computer Science 2024-10-30 Giovanni Da San Martino , Nicolò Navarin , Alessandro Sperduti

We introduce a cluster evaluation technique called Tree Index. Our Tree Index algorithm aims at describing the structural information of the clustering rather than the quantitative format of cluster-quality indexes (where the representation…

Machine Learning · Computer Science 2020-03-25 A. H. Beg , Md Zahidul Islam , Vladimir Estivill-Castro

Most existing Secure Multi-Party Computation (MPC) protocols for privacy-preserving training of decision trees over distributed data assume that the features are categorical. In real-life applications, features are often numerical. The…

We define linear and semilinear isometry for general subspace codes, used for random network coding. Furthermore, some results on isometry classes and automorphism groups of known constant dimension code constructions are derived.

Information Theory · Computer Science 2014-06-20 Anna-Lena Trautmann