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Spatial transcriptomics studies are becoming increasingly large and commonplace, necessitating simultaneous analysis of a large number of spatially resolved variables. Correspondingly, a diverse range of methodologies have been proposed to…

Quantitative Methods · Quantitative Biology 2025-09-09 James Boyle , Gregory Hamm , Eleanor Williams , Robin JG Hartman , Magnus Soderburg , Ian Henry , Michael Casey

This paper brings together three distinct theories with the goal of quantifying shape textures with complex morphologies. Distance fields are central objects in shape representation, while topological data analysis uses algebraic topology…

Algebraic Topology · Mathematics 2023-07-04 Anna Song , Ka Man Yim , Anthea Monod

We prove that a continuous path with finite length in a real Banach space cannot have infinitely many zero components in its signature unless it is tree-like. In particular, this allows us to strengthen a limit theorem for signature…

Classical Analysis and ODEs · Mathematics 2018-12-24 Horatio Boedihardjo , Xi Geng

The signature of a parametric curve is a sequence of tensors whose entries are iterated integrals. This construction is central to the theory of rough paths in stochastic analysis. It is here examined through the lens of algebraic geometry.…

Probability · Mathematics 2019-12-04 Carlos Améndola , Peter Friz , Bernd Sturmfels

Sequential and temporal data arise in many fields of research, such as quantitative finance, medicine, or computer vision. A novel approach for sequential learning, called the signature method and rooted in rough path theory, is considered.…

Machine Learning · Statistics 2020-12-10 Adeline Fermanian

Paths of persistence diagrams provide a summary of the dynamic topological structure of a one-parameter family of metric spaces. These summaries can be used to study and characterize the dynamic shape of data such as swarming behavior in…

Algebraic Topology · Mathematics 2023-11-17 Chad Giusti , Darrick Lee

The signature transform, which is defined in terms of iterated path integrals of all orders, provides a faithful representation of the group of tree-reduced geometric rough paths. While the signature coefficients are known to decay…

Probability · Mathematics 2025-06-24 Horatio Boedihardjo , Xi Geng , Sheng Wang

Topology is a fundamental aspect of quantum physics, and it has led to key breakthroughs and results in various fields of quantum materials. In condensed matters, this has culminated in the recent discovery of symmetry-protected topological…

Materials Science · Physics 2023-10-24 Baokai Wang , Yi-Chun Hung , Xiaoting Zhou , Tzen Ong , Hsin Lin

For sufficiently tame paths in $\mathbb{R}^n$, Euclidean length provides a canonical parametrization of a path by length. In this paper we provide such a parametrization for all continuous paths. This parametrization is based on an…

General Topology · Mathematics 2016-09-13 L. C. Hoehn , L. G. Oversteegen , E. D. Tymchatyn

We expose a class of discrete metric spaces, for which bounded geometry is equivalent to the property A of G. Yu. This class includes the coarse disjoint union of $(\mathbb Z/2\mathbb Z)^n$, $n\in\mathbb N$, and consists of spaces of simple…

Metric Geometry · Mathematics 2025-11-21 V. Manuilov

Topological Data Analysis (TDA) has been successfully used for various tasks in signal/image processing, from visualization to supervised/unsupervised classification. Often, topological characteristics are obtained from persistent homology…

Sound · Computer Science 2023-10-11 Guillem Bonafos , Jean-Marc Freyermuth , Pierre Pudlo , Samuel Tronçon , Arnaud Rey

We propose a novel method for topological analysis of unweighted graphs which is based on \textit{persistent homology}. The proposed method maps the input graph to a complete weighted graph where the weighting function maps each edge to a…

Algebraic Topology · Mathematics 2020-07-31 Padraig Corcoran

We study the properties of topological spaces $(X,\tau)$, where $X$ is a definable set in an o-minimal structure and the topology $\tau$ on $X$ has a basis that is (uniformly) definable. Examples of such spaces include the canonical…

Logic · Mathematics 2023-10-11 Pablo Andújar Guerrero , Margaret E. M. Thomas

We construct a locally compact Hausdorff topology on the path space of a finitely aligned $k$-graph $\Lambda$. We identify the boundary-path space $\partial\Lambda$ as the spectrum of a commutative $C^*$-subalgebra $D_\Lambda$ of…

Operator Algebras · Mathematics 2012-03-01 Samuel B. G. Webster

Through the use of examples, we explain one way in which applied topology has evolved since the birth of persistent homology in the early 2000s. The first applications of topology to data emphasized the global shape of a dataset, such as…

Algebraic Topology · Mathematics 2021-04-23 Henry Adams , Michael Moy

There are three important types of structural properties that remain unchanged under the structural transformation of condensed matter physics and chemistry. They are the properties that remain unchanged under the structural periodic…

Materials Science · Physics 2021-08-17 John Hongguang Zhang

What does it mean for a shape to change continuously? Over the space of convex regions, there is only one "reasonable" answer. However, over a broader class of regions, such as the class of star-shaped regions, there can be many different…

General Topology · Mathematics 2021-09-21 Ernest Davis

Computational topology provides a tool, persistent homology, to extract quantitative descriptors from structured objects (images, graphs, point clouds, etc). These descriptors can then be involved in optimization problems, typically as a…

Computational Geometry · Computer Science 2026-03-27 Mathieu Carriere , Yuichi Ike , Théo Lacombe , Naoki Nishikawa

The treatment of equality as a type in type theory gives rise to an interesting type-theoretic structure known as `identity type'. The idea is that, given terms $a,b$ of a type $A$, one may form the type $Id_{A}(a,b)$, whose elements are…

Logic in Computer Science · Computer Science 2018-04-27 Arthur Freitas Ramos , Ruy J. G. B. de Queiroz , Anjolina G. de Oliveira

The main objective of this work is to study mathematical properties of computational paths. Originally proposed by de Queiroz \& Gabbay (1994) as `sequences or rewrites', computational paths are taken to be terms of the identity type of…

Logic in Computer Science · Computer Science 2016-09-09 Arthur F. Ramos , Ruy J. G. B. de Queiroz , Anjolina G. de Oliveira