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Species distribution models (SDMs), which aim to predict species occurrence based on environmental variables, are widely used to monitor and respond to biodiversity change. Recent deep learning advances for SDMs have been shown to perform…

Machine Learning · Computer Science 2025-11-14 Catherine Villeneuve , Benjamin Akera , Mélisande Teng , David Rolnick

In ecology we may find scenarios where the same phenomenon (species occurrence, species abundance, etc.) is observed using two different types of samplers. For instance, species data can be collected from scientific sampling with a…

Conservation science depends on an accurate understanding of what's happening in a given ecosystem. How many species live there? What is the makeup of the population? How is that changing over time? Species Distribution Modeling (SDM) seeks…

Machine Learning · Computer Science 2021-07-23 Sara Beery , Elijah Cole , Joseph Parker , Pietro Perona , Kevin Winner

A central characteristic of Bayesian statistics is the ability to consistently incorporate prior knowledge into various modeling processes. In this paper, we focus on translating domain expert knowledge into corresponding prior…

Methodology · Statistics 2024-04-16 Florence Bockting , Stefan T. Radev , Paul-Christian Bürkner

Species distribution models (SDMs) aim to predict the distribution of species by relating occurrence data with environmental variables. Recent applications of deep learning to SDMs have enabled new avenues, specifically the inclusion of…

Machine Learning · Computer Science 2024-11-07 Nina van Tiel , Robin Zbinden , Emanuele Dalsasso , Benjamin Kellenberger , Loïc Pellissier , Devis Tuia

Species Distribution Models (SDMs) play a vital role in biodiversity research, conservation planning, and ecological niche modeling by predicting species distributions based on environmental conditions. The selection of predictors is…

Machine Learning · Computer Science 2025-08-22 Robin Zbinden , Nina van Tiel , Gencer Sumbul , Chiara Vanalli , Benjamin Kellenberger , Devis Tuia

Understanding the relative contributions of environmental, spatial, and temporal processes in shaping species distribution is a central objective in ecology. Bayesian species distribution models (SDMs) offer a flexible framework for this…

Applications · Statistics 2026-03-11 Luisa Ferrari , Massimo Ventrucci , Alex Laini

We discuss species distribution models (SDM) for biodiversity studies in ecology. SDM plays an important role to estimate abundance of a species based on environmental variables that are closely related with the habitat of the species. The…

Applications · Statistics 2023-05-01 Osamu Komori , Yusuke Saigusa , Shinto Eguchi

This article introduces a new method for eliciting prior distributions from experts. The method models an expert decision-making process to infer a prior probability distribution for a rare event $A$. More specifically, assuming there…

Methodology · Statistics 2023-07-17 Julia R. Falconer , Eibe Frank , Devon L. L. Polaschek , Chaitanya Joshi

Species distribution models (SDM) are a key tool in ecology, conservation and management of natural resources. Two key components of the state-of-the-art SDMs are the description for species distribution response along environmental…

Methodology · Statistics 2021-11-08 Jarno Vanhatalo , Marcelo Hartmann , Lari Veneranta

The prior distribution for the unknown model parameters plays a crucial role in the process of statistical inference based on Bayesian methods. However, specifying suitable priors is often difficult even when detailed prior knowledge is…

Methodology · Statistics 2020-03-18 Marcelo Hartmann , Georgi Agiashvili , Paul Bürkner , Arto Klami

Ecological and conservation studies monitoring bird communities typically rely on species classification based on bird vocalizations. Historically, this has been based on expert volunteers going into the field and making lists of the bird…

Methodology · Statistics 2026-05-29 Haoxuan Wang , Patrik Lauha , David B. Dunson

Species distribution models (SDMs) are widely used to predict species' geographic distributions, serving as critical tools for ecological research and conservation planning. Typically, SDMs relate species occurrences to environmental…

Machine Learning · Computer Science 2025-08-12 Hager Radi Abdelwahed , Mélisande Teng , Robin Zbinden , Laura Pollock , Hugo Larochelle , Devis Tuia , David Rolnick

Species distribution models (SDMs) commonly produce probabilistic occurrence predictions that must be converted into binary presence-absence maps for ecological inference and conservation planning. However, this binarization step is…

Researchers and managers model ecological communities to infer the biotic and abiotic variables that shape species' ranges, habitat use, and co-occurrence which, in turn, are used to support management decisions and test ecological…

Applications · Statistics 2020-06-01 Trevor Hefley

Species distribution models (SDMs) are increasingly applied across macroscales. Such models typically assume that a single set of regression coefficients can adequately describe species-environment relationships and/or population trends.…

This chapter aims to inform a practitioner about current methods for predicting potential distributions of invasive species. It mostly addresses single species models, covering the conceptual bases, touching on mechanistic models, and then…

Populations and Evolution · Quantitative Biology 2015-07-31 Jane Elith

The post-2020 global biodiversity framework needs ambitious, research-based targets. Estimating the accelerated extinction risk due to climate change is critical. The International Union for Conservation of Nature (IUCN) measures the…

Populations and Evolution · Quantitative Biology 2024-01-12 Joaquim Estopinan , Pierre Bonnet , Maximilien Servajean , François Munoz , Alexis Joly

This paper focuses on a core task in computational sustainability and statistical ecology: species distribution modeling (SDM). In SDM, the occurrence pattern of a species on a landscape is predicted by environmental features based on…

Machine Learning · Computer Science 2021-02-19 Eugene Seo , Rebecca A. Hutchinson , Xiao Fu , Chelsea Li , Tyler A. Hallman , John Kilbride , W. Douglas Robinson

Recent work [ 14 ] has introduced a method for prior elicitation that utilizes records of expert decisions to infer a prior distribution. While this method provides a promising approach to eliciting expert uncertainty, it has only been…

Machine Learning · Computer Science 2025-01-22 Julia R. Falconer , Eibe Frank , Devon L. L. Polaschek , Chaitanya Joshi
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