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Self-supervised learning on graphs can be bifurcated into contrastive and generative methods. Contrastive methods, also known as graph contrastive learning (GCL), have dominated graph self-supervised learning in the past few years, but the…

Machine Learning · Computer Science 2024-02-13 Liang Wang , Xiang Tao , Qiang Liu , Shu Wu , Liang Wang

Self-supervised learning of deep neural networks has become a prevalent paradigm for learning representations that transfer to a variety of downstream tasks. Similar to proposed models of the ventral stream of biological vision, it is…

Machine Learning · Computer Science 2023-06-26 Kion Fallah , Alec Helbling , Kyle A. Johnsen , Christopher J. Rozell

Learning robust representations to discriminate cell phenotypes based on microscopy images is important for drug discovery. Drug development efforts typically analyse thousands of cell images to screen for potential treatments. Early works…

Computer Vision and Pattern Recognition · Computer Science 2021-12-28 Alexis Perakis , Ali Gorji , Samriddhi Jain , Krishna Chaitanya , Simone Rizza , Ender Konukoglu

Graph representation learning has attracted a surge of interest recently, whose target at learning discriminant embedding for each node in the graph. Most of these representation methods focus on supervised learning and heavily depend on…

Machine Learning · Computer Science 2021-07-07 Pengpeng Shao , Tong Liu , Dawei Zhang , Jianhua Tao , Feihu Che , Guohua Yang

While some powerful neural network architectures (e.g., Transformer, Graph Neural Networks) have achieved improved performance in sequential recommendation with high-order item dependency modeling, they may suffer from poor representation…

Information Retrieval · Computer Science 2023-06-02 Yaowen Ye , Lianghao Xia , Chao Huang

Graph contrastive learning (GCL), as a popular approach to graph self-supervised learning, has recently achieved a non-negligible effect. To achieve superior performance, the majority of existing GCL methods elaborate on graph data…

Machine Learning · Computer Science 2022-05-03 Yuansheng Wang , Wangbin Sun , Kun Xu , Zulun Zhu , Liang Chen , Zibin Zheng

We focus on contrastive methods for self-supervised video representation learning. A common paradigm in contrastive learning is to construct positive pairs by sampling different data views for the same instance, with different data…

Computer Vision and Pattern Recognition · Computer Science 2021-08-23 Chen Sun , Arsha Nagrani , Yonglong Tian , Cordelia Schmid

Existing text recognition methods usually need large-scale training data. Most of them rely on synthetic training data due to the lack of annotated real images. However, there is a domain gap between the synthetic data and real data, which…

Computer Vision and Pattern Recognition · Computer Science 2023-03-03 Mingkun Yang , Minghui Liao , Pu Lu , Jing Wang , Shenggao Zhu , Hualin Luo , Qi Tian , Xiang Bai

Detecting anomalies is one fundamental aspect of a safety-critical software system, however, it remains a long-standing problem. Numerous branches of works have been proposed to alleviate the complication and have demonstrated their…

Machine Learning · Computer Science 2023-01-31 Hyunsoo Cho , Jinseok Seol , Sang-goo Lee

Contrastive learning has been widely applied to graph representation learning, where the view generators play a vital role in generating effective contrastive samples. Most of the existing contrastive learning methods employ pre-defined…

Machine Learning · Computer Science 2022-01-04 Yihang Yin , Qingzhong Wang , Siyu Huang , Haoyi Xiong , Xiang Zhang

Graph-level contrastive learning, aiming to learn the representations for each graph by contrasting two augmented graphs, has attracted considerable attention. Previous studies usually simply assume that a graph and its augmented graph as a…

Artificial Intelligence · Computer Science 2024-04-15 Yanbei Liu , Yu Zhao , Xiao Wang , Lei Geng , Zhitao Xiao

In this paper, we introduce a self-supervised learning method to enhance the graph-level representations with the help of a set of subgraphs. For this purpose, we propose a universal framework to generate subgraphs in an auto-regressive way…

Machine Learning · Computer Science 2021-05-10 Chenguang Wang , Ziwen Liu

Molecular representation learning is vital for various downstream applications, including the analysis and prediction of molecular properties and side effects. While Graph Neural Networks (GNNs) have been a popular framework for modeling…

Machine Learning · Computer Science 2025-02-18 Pengcheng Jiang , Cao Xiao , Tianfan Fu , Parminder Bhatia , Taha Kass-Hout , Jimeng Sun , Jiawei Han

Recently many efforts have been devoted to applying graph neural networks (GNNs) to molecular property prediction which is a fundamental task for computational drug and material discovery. One of major obstacles to hinder the successful…

Machine Learning · Computer Science 2021-09-27 Shuangli Li , Jingbo Zhou , Tong Xu , Dejing Dou , Hui Xiong

Generalizable, transferrable, and robust representation learning on graph-structured data remains a challenge for current graph neural networks (GNNs). Unlike what has been developed for convolutional neural networks (CNNs) for image data,…

Machine Learning · Computer Science 2021-04-06 Yuning You , Tianlong Chen , Yongduo Sui , Ting Chen , Zhangyang Wang , Yang Shen

Molecular property prediction is a key component of AI-driven drug discovery and molecular characterization learning. Despite recent advances, existing methods still face challenges such as limited ability to generalize, and inadequate…

Machine Learning · Computer Science 2024-09-26 Zexing Zhao , Guangsi Shi , Xiaopeng Wu , Ruohua Ren , Xiaojun Gao , Fuyi Li

Although substantial efforts have been made using graph neural networks (GNNs) for AI-driven drug discovery (AIDD), effective molecular representation learning remains an open challenge, especially in the case of insufficient labeled…

Machine Learning · Computer Science 2023-11-07 Zhen Wang , Zheng Feng , Yanjun Li , Bowen Li , Yongrui Wang , Chulin Sha , Min He , Xiaolin Li

Self-supervised auto-encoders have emerged as a successful framework for representation learning in computer vision and natural language processing in recent years, However, their application to graph data has been met with limited…

Artificial Intelligence · Computer Science 2023-01-31 Chengyu Sun

Graph neural networks (GNNs) demonstrate great performance in compound property and activity prediction due to their capability to efficiently learn complex molecular graph structures. However, two main limitations persist including…

Biomolecules · Quantitative Biology 2023-10-10 Apakorn Kengkanna , Masahito Ohue

Recent progress in pretrained Transformer-based language models has shown great success in learning contextual representation of text. However, due to the quadratic self-attention complexity, most of the pretrained Transformers models can…

Computation and Language · Computer Science 2021-10-22 Peng Xu , Xinchi Chen , Xiaofei Ma , Zhiheng Huang , Bing Xiang